| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,208,239 – 7,208,355 |
| Length | 116 |
| Max. P | 0.629565 |
| Location | 7,208,239 – 7,208,355 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.12 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -24.98 |
| Energy contribution | -24.78 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7208239 116 + 22407834 GUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCUCAUUCCAUAUGUUGAUUUAUUCUUAAAGUUGCGCAGAAAUUGUGGCGCCCCUACAUGCAAAA---- (((((........(((((((....((((((.((((((.....)))))).)))))).....)))))))..((((....)))))))))(((.....(((((.....))))))))....---- ( -29.60) >DroVir_CAF1 4260 113 + 1 GUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCUCAUACCAUAUGUUGAUUUAUUCUUAAAGUUGCGCAGAAACUGCGGUGCACCUGUGAAUG------- ...............(((.((((.((((((.((((((.....)))))).)))))).((((....((...((((....))))...))((((...)))))))).....)))))))------- ( -30.10) >DroGri_CAF1 3209 114 + 1 GUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUGACCACCAUGUGUAUGCUCAUACCAUAUGUGGAUUUGUUUUGAAAGUUGCGCAGAAACUGCGGCGCACCUGCAAAAUU------ (((((...((..(((((.(((...((((((.((((((.....)))))).)))))).(((.....)))))).))))).))..)))))((((...))))...((....))......------ ( -34.00) >DroWil_CAF1 1977 116 + 1 AUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUUACCAUGUGUAUGCUCAUUCCAUAUGUUGAUUUAUUCUUAAAGUUGCGCAGAAAUUGCGGUGCUCCUAUCAGAGAGG---- ....((((((...(((((((....((((((.((((((.....)))))).)))))).....)))))))))))..((((.(.((..((((.(......).))))..)).).)))).))---- ( -29.00) >DroMoj_CAF1 3366 114 + 1 GUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUUAUCACCAUGUGAAUGCUCAUACCAUAUGUUGAUUUAUUCUUAAAGUUGCGCAGGAAUUGCGGCGCACCUGCAAGAGA------ ........((((((((((((....((((((.(((((.......))))).)))))).....))))))).............((.(((((.(......).))))).)).)))))..------ ( -30.10) >DroAna_CAF1 2267 120 + 1 GUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCUCAUUCCAUAUGUCGAUUUAUUCUUAAAGUUGCGCAGGAAUUGCGGCGCCCCUAAACGAAUGAGUUG ..............((((((....((((((.((((((.....)))))).)))))).....))))))((((((((((....((..((((.(......).))))..))....)))))))))) ( -32.90) >consensus GUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCUCAUACCAUAUGUUGAUUUAUUCUUAAAGUUGCGCAGAAAUUGCGGCGCACCUACAAGAGA______ ......((((....((((((....((((((.((((((.....)))))).)))))).....)))))).)))).............((((.(......).)))).................. (-24.98 = -24.78 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:47 2006