| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,199,893 – 7,199,995 |
| Length | 102 |
| Max. P | 0.985103 |
| Location | 7,199,893 – 7,199,995 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.38 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -23.76 |
| Energy contribution | -23.77 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.84 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7199893 102 - 22407834 AUAGUAGGUGUUCGCUAAUGGCUGGGAACAAAGAACUGUUGCAGGGGCCAUUAGUCAGCAUCUCGCUCUCCCUCUCUGUUUCUCUCGGCUGUUUUCCCGCCU ..((((((((((.((((((((((.(.((((......)))).)...)))))))))).))))))).)))...................(((.........))). ( -31.10) >DroEre_CAF1 42496 87 - 1 AAAGUAGGUGUUCGCUAAUGGCUGGGAACAAAGAACUGUUGCAGGGGCCAUUAGUCAGCAUCUCUCUCUCUCUCG------------CCGAU---CAAGCCU ..((.(((((((.((((((((((.(.((((......)))).)...)))))))))).)))))))))..........------------.....---....... ( -26.90) >DroAna_CAF1 18593 82 - 1 --GGUAGGUGUUCGCUAAUGGCCGAGAACAAAGAACUGUUGCAGGGGCCAUUAGUCAGCGGUUCUCAAUGC--------CCCUCU----------CCAGCCU --(((.((.(((.((((((((((..(((((......)))).)...)))))))))).)))(((.......))--------).....----------)).))). ( -26.80) >consensus A_AGUAGGUGUUCGCUAAUGGCUGGGAACAAAGAACUGUUGCAGGGGCCAUUAGUCAGCAUCUCUCUCUCCCUC_______CUCU___C__U___CCAGCCU ...(.(((((((.((((((((((.(.((((......)))).)...)))))))))).))))))))...................................... (-23.76 = -23.77 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:36 2006