Locus 2595

Sequence ID 2L_DroMel_CAF1
Location 7,188,678 – 7,188,777
Length 99
Max. P 0.996552
window4135

overview

Window 5

Location 7,188,678 – 7,188,777
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.05
Mean single sequence MFE -27.08
Consensus MFE -20.22
Energy contribution -20.46
Covariance contribution 0.24
Combinations/Pair 1.18
Mean z-score -2.35
Structure conservation index 0.75
SVM decision value 2.71
SVM RNA-class probability 0.996552
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7188678 99 - 22407834
ACCUCCCCCUUGAUAUCACUCUCCAGCUCUCUUUUCGCCUCUCUGCACGGGCGUAAGCAUUUGCGUCGAAGGGG-GUUAUUUG------------CCCCAACCACAAUAAAU--------
....((((((((((.....................(((((........)))))...((....))))).))))))-).......------------.................-------- ( -22.80)
>DroSec_CAF1 6387 100 - 1
ACCUCCCCCUUCAUAUUACUCUCCAGCUCUCUUUUCGCCUCUGUGCACGGGCGUAAGUAUUUGCGUCGAAGGGGGAUUAUUUG------------CCCCAACCACAAUAAAC--------
...(((((((((.............((.(.............).))...(((((((....)))))))))))))))).......------------.................-------- ( -26.12)
>DroSim_CAF1 19869 100 - 1
ACCUCCCCCUUCAUAUUACUCUCCAGCUCUCUUUUCGCCACUCUGCACGGGCGUAAGUAUUUGCGUCGAAGGGGGGUUAUUUG------------CCCCAACGACAAUAUAA--------
...(((((((((........................((......))...(((((((....)))))))))))))))).......------------.................-------- ( -25.20)
>DroEre_CAF1 28641 98 - 1
ACCUCCCCCUCCAUUACACUCUCCUGCUCUCUCUUCGCCUCUCUGCACGGGCGUAAGCAGUUGUGUCGAGGGGGGUCC-----------CACCUCUCCCAAUUAUAAAC-----------
...((((((((....((((....(((((.......(((((........)))))..)))))..)))).))))))))...-----------....................----------- ( -30.10)
>DroYak_CAF1 21120 120 - 1
ACCUCCCCCUCCAUAGCAGUCUCCAGCUCUCUUUUCGCCUCUCUGCAUGGGCGCAAGCAGUUGUGUCGAAGGGGGUCCAGUUGUCAACACCCCCCUCCCCACUACAAAAAAAAAGUAUAU
..........((((.((((......((.........))....))))))))((....)).((.(((..((.((((((............)))))).))..))).))............... ( -31.20)
>consensus
ACCUCCCCCUUCAUAUCACUCUCCAGCUCUCUUUUCGCCUCUCUGCACGGGCGUAAGCAUUUGCGUCGAAGGGGGGUUAUUUG____________CCCCAACCACAAUAAAA________
....((((((((........................((......))...(((((((....)))))))))))))))............................................. (-20.22 = -20.46 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:29 2006