| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,183,487 – 7,183,596 |
| Length | 109 |
| Max. P | 0.796223 |
| Location | 7,183,487 – 7,183,596 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -34.13 |
| Consensus MFE | -21.79 |
| Energy contribution | -22.57 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7183487 109 - 22407834 GAUCAUCCGCCACGGGCACCUGUAUGGUGGCAAAGUAGCGAAACACUUUGUCCGGCGUGGAGAACUGCCGUAUGCGGUUCUCAUACUCAAUUAUCUAAG-----GCAAACAACG------ ........(((.(((.((((.....))))(((((((........))))))))))(.((((((((((((.....))))))))).))).)..........)-----))........------ ( -36.50) >DroVir_CAF1 4507 105 - 1 GAUCAUCGGCGACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCUGGCGUCGAGAAUUGCCUGAUGCGAUUCUCAUACUCAAUGAUCUAAG------CAAUAA--------- ((((((.((((.((((((((.....))))((((((((......))))))))))))))))(((((((((.....))))))))).......))))))....------......--------- ( -39.30) >DroGri_CAF1 1265 105 - 1 GAUCGUCGGCCACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUAUCUGGCGUCGAGAAUUGCCUUAUGCGAUUCUCAUACUCAAUGAUCUAAG------CAAUAA--------- (((((((((((((((.(.....).)))))))((((((......))))))...))))...(((((((((.....))))))))).........))))....------......--------- ( -35.30) >DroWil_CAF1 1895 119 - 1 GAUCAUCGGCCACGGGGACUUGAAUGGUCGCAAAAUAUCGAAAUACUUUGUCCGGUGUGGAGAACUGACGUAUACGAUUCUCAUACUCAAUUAUCUAAUUGUAAGUGAAUAAUUCAUUU- ..((((..(((((.((((((.....))))(((((.(((....))).))))))).)))((((.((.(((.((((.........))))))).)).))))...))..))))...........- ( -20.60) >DroMoj_CAF1 5143 105 - 1 GAUCAUCGGCGACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCUGGCGUCGAGAAUUGCCUGAUGCGAUUCUCAUACUCAAUAAUCUAAG------CAAUAA--------- .......((((.((((((((.....))))((((((((......))))))))))))))))(((((((((.....))))))))).................------......--------- ( -33.70) >DroAna_CAF1 1201 110 - 1 GAUCAUCGGCCACUGGCACUUGGAUGGUGGCAAAGUAACGAAAAACUUUGUCCGGCGUAGAAAACUGCCGGAUACGGUUCUCAUACUCGAUGAUCUAAG-----GCAAAGGACA-----A ((((((((((((((..(.....)..))))))..((((..((..((((.(((((((((........))))))))).)))).)).))))))))))))....-----..........-----. ( -39.40) >consensus GAUCAUCGGCCACCGGCACUUGGAUGGUGGCAAAGUAGCGAAAUACUUUGUCCGGCGUCGAGAACUGCCGGAUGCGAUUCUCAUACUCAAUGAUCUAAG______CAAAAA_________ (((.....(((.....((((.....))))((((((((......))))))))..)))...(((((((((.....)))))))))..........)))......................... (-21.79 = -22.57 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006