| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,183,260 – 7,183,360 |
| Length | 100 |
| Max. P | 0.769012 |
| Location | 7,183,260 – 7,183,360 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -27.73 |
| Consensus MFE | -20.60 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7183260 100 - 22407834 GAUAUAAUUACA--UAUGCUCAUUUGAAUGAGUGAUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGAAAAUCCUCGGGAGUCAUGCAGACA ............--...((((((....))))))......((....))((((.((((((((((......(((..........))))))))))))).))))... ( -28.30) >DroSec_CAF1 928 96 - 1 UAAAUAACUACG--UAUGCUCAUC----UGAAUGAUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGGAAAUCCUCGGGAGUCAUGCAGACA ...........(--((...((((.----...))))..))).......((((.((((((((((......(((.(....)...))))))))))))).))))... ( -27.10) >DroSim_CAF1 14388 86 - 1 UAUAUAACUGAA----------------UGGGUGAUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGGAAAUCCUCGGGAGUCAUGCAGACA .......((..(----------------(((........))))..))((((.((((((((((......(((.(....)...))))))))))))).))))... ( -30.80) >DroEre_CAF1 23184 102 - 1 UAUAUAACUCUAUAUGUGGUCAUCUCAAUGAGUGAUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGGAAAUCCUCGGGAGUCAUGCAGACA .........(((.(((.(((((.(((...))))))))...))).)))((((.((((((((((......(((.(....)...))))))))))))).))))... ( -31.30) >DroYak_CAF1 15589 102 - 1 UAUAUAACUUCAUAUAUGGUUAUCUUAAUGAGUGCUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGGAAAUCCUCGGGAGUCAUGCACACA ...((((((........))))))........(((.....((....)).(((.((((((((((......(((.(....)...))))))))))))).)))))). ( -27.50) >DroAna_CAF1 995 99 - 1 UGU-UAGUUAAG--GAUGGAUUUCUGGGUGAAUAAUUUACCAUCUGGCUGCUUGAUUCCUGGAUAAAUGGAGCGUAGAAAGUCCUCGGGUGUCAUACAGACG ...-.(.(..((--(((...(((((((((((.....)))))........((((.(((........))).)))).)))))))))))..).)(((.....))). ( -21.40) >consensus UAUAUAACUACA__UAUGGUCAUCU_AAUGAGUGAUUUACCAUCUGGCUGCUUGAUUCCCGGAUAAAUGGAGCGAAGGAAAUCCUCGGGAGUCAUGCAGACA .......................................((....))((((.((((((((((......(((.(....)...))))))))))))).))))... (-20.60 = -21.30 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:27 2006