Locus 2591

Sequence ID 2L_DroMel_CAF1
Location 7,173,521 – 7,173,613
Length 92
Max. P 0.868268
window4129

overview

Window 9

Location 7,173,521 – 7,173,613
Length 92
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 76.51
Mean single sequence MFE -22.35
Consensus MFE -13.84
Energy contribution -15.40
Covariance contribution 1.56
Combinations/Pair 1.09
Mean z-score -1.88
Structure conservation index 0.62
SVM decision value 0.86
SVM RNA-class probability 0.868268
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7173521 92 - 22407834
AUUGCUGCUAAUUUUCAGCAUUUCCUAAAAGGCAAAAA----------------------------GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU
..(((((........)))))...(((((...((.....----------------------------)).......(..(((((((((........))).))))))..)....)))))... ( -22.70)
>DroSec_CAF1 115012 92 - 1
AUUGCUGCUAAUUUUCAGCAUUGCCUAAAAGGCAAAAA----------------------------GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU
..(((((........)))))..((((((...((.....----------------------------)).......(..(((((((((........))).))))))..)....)))))).. ( -26.80)
>DroAna_CAF1 121011 120 - 1
AUUGCUGCUAAUUUUUUUCAUUGCCUAAAAGCUAAAAACAAAAAAAAAAAUGGGGAAAUAAGAAAUACAAAUCUCAGCUGAAAAGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU
(((((.(((((((.......((((((...((((.....((..........))((((...............))))))))....)))))).))))))).....)))))............. ( -17.56)
>consensus
AUUGCUGCUAAUUUUCAGCAUUGCCUAAAAGGCAAAAA____________________________GCAAAUCUCGGCUGCAGUGGCAACAAUUGGCCAAUUGCAAUCUUCAUUAGGCUU
..(((((........)))))..((((((......................................((........))(((((((((........))).)))))).......)))))).. (-13.84 = -15.40 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:23 2006