Locus 2590

Sequence ID 2L_DroMel_CAF1
Location 7,172,984 – 7,173,100
Length 116
Max. P 0.536296
window4128

overview

Window 8

Location 7,172,984 – 7,173,100
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 86.20
Mean single sequence MFE -40.80
Consensus MFE -34.46
Energy contribution -34.13
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.536296
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7172984 116 + 22407834
---GCAACCAGAAUCGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU-UGGCUUACAGCGGCUGGAUGCCGCAGCUUAGUAUUUGCAU
---((((........((((((......)))))).....(((((..(((((((((....((..(((.((.....)).)))-..))....)))))))))...))))).........)))).. ( -41.30)
>DroSec_CAF1 114475 115 + 1
---GCACCCAGAAUUGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU-UGGCUUACAGCGGCUG-AUGCCGCAGCUUAGUAUUUGCAU
---((((.((....(((((((......))))))))).))))(((((((((((...((((..((.....)).))))))))-)))......(((((..-..))))).))))........... ( -41.20)
>DroAna_CAF1 120385 112 + 1
UUGGAAGCCCGAAGUGGCCAAAAGCACUUGGCCAUGUGUGCCGAAGCAGCUGCUC-------GCUUAUUGUCAGUCGGUUUGGCUUACAACGGCUG-AUGCUGCAGCUUAGUAUUUGCAU
((((....)))).((((((((......))))))))..((((.((.((((((((..-------((.....((((((((...((.....)).))))))-)))).))))))..)).)).)))) ( -39.90)
>consensus
___GCAACCAGAAUUGGCCAAAAGCACUUGGCCAUGUGUGCGGGCCCAGCUGCUCACUGUUCACUUAUUGUCAGUCGGU_UGGCUUACAGCGGCUG_AUGCCGCAGCUUAGUAUUUGCAU
...............((((((......))))))....(((((((..(((((((..............((((.((((.....)))).)))).(((.....)))))))))..)..))))))) (-34.46 = -34.13 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:22 2006