Locus 2587

Sequence ID 2L_DroMel_CAF1
Location 7,169,071 – 7,169,161
Length 90
Max. P 0.724805
window4123

overview

Window 3

Location 7,169,071 – 7,169,161
Length 90
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 88.81
Mean single sequence MFE -34.07
Consensus MFE -26.59
Energy contribution -27.70
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.78
SVM decision value 0.41
SVM RNA-class probability 0.724805
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7169071 90 + 22407834
------CGG--AGCCGGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGACUCUUAUCGCA
------...--.((((....((((((.......))))))...((((((.((..(((((....))))))).))))))...))))((((......)))). ( -34.80)
>DroSec_CAF1 110368 90 + 1
------CGG--AGCCAGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGCUCUUAUCGCA
------.((--(((((....((((((.......))))))...((((((...................))))))(((....))).)))))))....... ( -34.91)
>DroAna_CAF1 116441 96 + 1
UACGUCCGGAUAGACGGA--UCCGGAGACAAAAUCCGGAUACGGUCACAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGUUCUUAUCGCA
..((((.((...(((.((--((((((.......))))))).).)))...((.((((((....))))))..))..)).))))..(((((....))))). ( -32.50)
>consensus
______CGG__AGCCGGAUUUCCGGAGACAAAAUCCGGAUACGGUGGCAGCACUUUGACAUUUUAAAGCCGCCGCCAGACGGCGUGGCUCUUAUCGCA
............((((....((((((.......))))))...((((((.((..(((((....))))))).))))))...))))((((......)))). (-26.59 = -27.70 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:18 2006