| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,165,934 – 7,166,103 |
| Length | 169 |
| Max. P | 0.873524 |
| Location | 7,165,934 – 7,166,032 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.50 |
| Mean single sequence MFE | -27.94 |
| Consensus MFE | -19.22 |
| Energy contribution | -20.18 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7165934 98 + 22407834 CACAUACGAA-AAUUCAAUGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGCGGCUUUGUGGCAUACUGUCUGCCUGCAGAGUGCCCACUGUAA--------------------- ....((((..-.......((((.........))))......(((((..(((....)))(((((((((((.......)))).)))))))))))).)))).--------------------- ( -26.10) >DroSec_CAF1 107293 98 + 1 CACAUACAAA-AAUUCAAUGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGCGGCUUUGUGGCAUACUGUCUGCCUGCAGAGUGCCCACUGUAA--------------------- ....((((..-.......((((.........))))......(((((..(((....)))(((((((((((.......)))).)))))))))))).)))).--------------------- ( -26.80) >DroSim_CAF1 110396 98 + 1 CACAUACGAA-AAUUCAAUGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGCGGCUUUGUGGCAUACUGUCUGCCUGCAGAGUGCCCACUGUAA--------------------- ....((((..-.......((((.........))))......(((((..(((....)))(((((((((((.......)))).)))))))))))).)))).--------------------- ( -26.10) >DroYak_CAF1 115415 99 + 1 CACACACAAAAAAUGCAAUGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGCGGCUUUCUGGCAUACUGUCUGCGGACAGAGUGCCCACUGUAA--------------------- .............((((.((((.........))))......((((.(((.((((((((((.............).))))))).)).))))))).)))).--------------------- ( -26.22) >DroAna_CAF1 113543 116 + 1 CACAUAAAAAACAUUCGAAGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGUGGCUAUGUGGCAUACUGUCUGUC----GAGUGCCCACUGUACGUGGAGUGGAUGACAGAGGGG (((((..............(((.........))).........(((((((....)))))))))))).....((.((((((----(..(((((((.....)))).)))..))))))).)). ( -34.50) >consensus CACAUACAAA_AAUUCAAUGCUAAUAAAUCAAGCAAAUAUUUGGGUCACGCUUCCGCGGCUUUGUGGCAUACUGUCUGCCUGCAGAGUGCCCACUGUAA_____________________ .(((..............((((.........))))......(((((..(((....)))(((((((((((.......)))).)))))))))))).)))....................... (-19.22 = -20.18 + 0.96)
| Location | 7,166,013 – 7,166,103 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -22.42 |
| Consensus MFE | -19.24 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7166013 90 + 22407834 UGCAGAGUGCCCACUGUAAUGGUGGUGGUGGGGGAGGUGCAAAUGGACAUCGAUAGUGUCUAGUAAAAAGAAAAAUAUUUGCUUGAAAAU ((((...(.(((((..(.......)..))))).)...))))..(((((((.....)))))))(((((.(......).)))))........ ( -22.40) >DroSec_CAF1 107372 90 + 1 UGCAGAGUGCCCACUGUAAUGGCAGUGGUGGGGGAGGUGCAAAUGGACAUCGAUAGUGUCUAGUAAAAAGAAAAAUAUUUGCUUGAAAAU .((((((..((((((((....))))))........))..)...(((((((.....)))))))...............)))))........ ( -22.40) >DroSim_CAF1 110475 90 + 1 UGCAGAGUGCCCACUGUAAUGGCGGCGGUGGGGGAGGUGCAAAUGGACAUCGAUAGUGUCUAGUAAAAAGAAAAAUAUUUGCUUGAAAAU ((((...(.((((((((.......)))))))).)...))))..(((((((.....)))))))(((((.(......).)))))........ ( -25.30) >DroYak_CAF1 115495 88 + 1 GACAGAGUGCCCACUGUAAUGGUG--GGUGGGGAAGGUGCAAAUGGACAUCGAUAGUGUCUAGUAAAAAGAAAAAUAUUUGCUUGAAAAU ....(((((((((((.....))))--)))..............(((((((.....)))))))..................))))...... ( -19.60) >consensus UGCAGAGUGCCCACUGUAAUGGCGGUGGUGGGGGAGGUGCAAAUGGACAUCGAUAGUGUCUAGUAAAAAGAAAAAUAUUUGCUUGAAAAU ((((...(.(((((((.........))))))).)...))))..(((((((.....)))))))(((((.(......).)))))........ (-19.24 = -19.68 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:15 2006