Locus 2584

Sequence ID 2L_DroMel_CAF1
Location 7,165,632 – 7,165,732
Length 100
Max. P 0.700509
window4118

overview

Window 8

Location 7,165,632 – 7,165,732
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -24.82
Consensus MFE -14.90
Energy contribution -14.86
Covariance contribution -0.04
Combinations/Pair 1.19
Mean z-score -1.91
Structure conservation index 0.60
SVM decision value 0.35
SVM RNA-class probability 0.700509
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7165632 100 - 22407834
-----------------CAUUGGAAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGGAACUAUUCUGUGGCCUCAC--AAAA
-----------------((((....)))).(((((((....)))))))..((....)).......(((..((((((.....(((((-(.....)))))).)))))).)))....--.... ( -26.40)
>DroSec_CAF1 107008 100 - 1
-----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGGAACUAUUCUGUGGCCCAAC--AAAA
-----------------...((((..((.((.(((..(((((.(((....((....))))))))))))).))....((((.(((((-(.....)))))).))))))..))))..--.... ( -27.50)
>DroSim_CAF1 110095 100 - 1
-----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGGAACUGGCAGAUAGAAAGAAAAGUUU-CAACUUGCAACUAUUCUGUGGCCCCAC--AAAA
-----------------.(((((.......(((((((....)))))))....(((((.(((((((................)))))-)).)))))..))))).((((....)))--)... ( -27.89)
>DroYak_CAF1 115073 100 - 1
-----------------UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGCAAAGUUU-CAACUUGGAACUAUUCUGUAGCUCCAA--AAAA
-----------------...(((...(((((((((((....)))))))..))))...........(((..((((((.....(((((-(.....)))))).)))))).)))))).--.... ( -23.40)
>DroAna_CAF1 113113 119 - 1
UUAAAAAGCGGUUCUUUCCAUGAACAAUUCUUUGCGACACUUUGCACAACAUUAAAGAUGCAACUGACAGAUAGAAAGCAAAGUUUUCGUCUUGAAA-CAUUUUGUGGCCAAACUAAAAA
.........((((....(((..((...(((...((((.(((((((....((((...))))...(((.....)))...)))))))..))))...))).-...))..)))...))))..... ( -18.90)
>consensus
_________________UAAUGGGAAAUGAUGUGCGACAGUUCGCACAACUCGUAAGAUGCAACUGGCAGAUAGAAAGAAAAGUUU_CAACUUGGAACUAUUCUGUGGCCCCAC__AAAA
..............................(((((((....))))))).................(((..((((((....(((((...))))).......)))))).))).......... (-14.90 = -14.86 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:13 2006