Locus 2583

Sequence ID 2L_DroMel_CAF1
Location 7,165,476 – 7,165,592
Length 116
Max. P 0.893980
window4117

overview

Window 7

Location 7,165,476 – 7,165,592
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.98
Mean single sequence MFE -33.24
Consensus MFE -26.35
Energy contribution -26.54
Covariance contribution 0.19
Combinations/Pair 1.16
Mean z-score -1.91
Structure conservation index 0.79
SVM decision value 0.98
SVM RNA-class probability 0.893980
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7165476 116 - 22407834
UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUGAGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGCUUGCCAACCGC
.......(.(((((((((((.((.((((((((((((((..(....)..)))))......(((((((((.....----))))))))))))).))))).))..))))))))))).)...... ( -37.30)
>DroSec_CAF1 106852 116 - 1
UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUCAGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC
............((((((((.(((.....))).((((((.....((((...(((((((.(((((((((.....----))))))))).))))))))))).))))))))))))))....... ( -35.40)
>DroSim_CAF1 109939 116 - 1
UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAUGAGAAAGCGAAUUGUAUGUGUGAGAUGCGCUUCAG----GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC
.......(.(((((((((((.((.((((((((((((((..(....)..)))))......(((((((((.....----))))))))))))).))))).))..))))))))))).)...... ( -34.90)
>DroYak_CAF1 114943 92 - 1
UACCUUAGAUAAGCAAACAA------------------------CCGAAUUGUAUCUGUGAGAUGUGCUUCAG----GUGCAUCUCUUGGAUACUUGUAGAAUGUUUGUUUGCCAACCGC
.......(.((((((((((.------------------------.(.....(((((((.((((((..(.....----)..)))))).))))))).....)..)))))))))).)...... ( -30.40)
>DroAna_CAF1 112962 111 - 1
UAUCUUGGAUAAGCAAACAAGUGGAUGUGCCGG---------AAUCGAAUUGUAUCUUUGGGAUGCGUUUCUGUCUAUUGCAUCUUUGGGAUACCUGUAGCUUGUUUAUUUUGCAGCUGC
..(((.((....(((..(....)..))).))))---------)........(((((((..(((((((...........)))))))..)))))))..((((((.((.......)))))))) ( -28.20)
>consensus
UACCUUAGAUAAGCAAACAAGUGGAAGUGCCGGGCGAU_AGAAAGCGAAUUGUAUCUGUGAGAUGCGCUUCAG____GUGCAUCUUUUGGAUACUUGUAGAUUGUUUGUUUGCCAACCGC
.......(.(((((((((((.(((.....)))...................(((((((.(((((((((.........))))))))).))))))).......))))))))))).)...... (-26.35 = -26.54 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:12 2006