Locus 2581

Sequence ID 2L_DroMel_CAF1
Location 7,163,323 – 7,163,425
Length 102
Max. P 0.985687
window4114

overview

Window 4

Location 7,163,323 – 7,163,425
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.48
Mean single sequence MFE -36.55
Consensus MFE -29.59
Energy contribution -30.87
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -2.52
Structure conservation index 0.81
SVM decision value 2.02
SVM RNA-class probability 0.985687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7163323 102 - 22407834
------UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGUGCGGGGUGGGCGGUG------------AAAAAAAGGG
------.((((((((((((..........((((((((((((..(((.............)))))))))))))))........))))))))))))....------------.......... ( -38.99)
>DroSec_CAF1 104736 101 - 1
------UACUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG------------AAA-AAAGGG
------..((((((((((...........((((((((((((..(((.............))))))))))))))).........)))))))))).....------------...-...... ( -34.37)
>DroSim_CAF1 107834 101 - 1
------UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG------------AAA-AAAGGG
------.(((((((((((...........((((((((((((..(((.............))))))))))))))).........)))))))))))....------------...-...... ( -38.57)
>DroYak_CAF1 112746 98 - 1
------UGCUCGGCUCACAAAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGCUG------------GAA-A---GG
------.(((((.(((.............((((((((((((..(((.............))))))))))))))).(((....)))))).))))).((.------------...-)---). ( -31.72)
>DroAna_CAF1 109478 120 - 1
UCCUCUUGGUUGCCUCGCAAAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGGCGUGUAGGAGGAGGGUCUGGGUCUGGUCAGGAGGG
((((((((..((((((.((........))((((((((((((..(((.............))))))))))))))).......))))))..))))))))...(((((......))))).... ( -39.12)
>consensus
______UGCUCGCCUCGCAGAAAUUUAUGGCGUUUGCAUGUCUGAAUUUAUCUGCUUGUUUCACAUGCAAAUGCAGUCAAAGGGCGGGGUGGGCGGUG____________AAA_AAAGGG
......((((((((((((...........((((((((((((..(((.............))))))))))))))).........))))))))))))......................... (-29.59 = -30.87 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:09 2006