Locus 2578

Sequence ID 2L_DroMel_CAF1
Location 7,151,397 – 7,151,491
Length 94
Max. P 0.548515
window4111

overview

Window 1

Location 7,151,397 – 7,151,491
Length 94
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.54
Mean single sequence MFE -28.95
Consensus MFE -9.53
Energy contribution -10.40
Covariance contribution 0.87
Combinations/Pair 1.26
Mean z-score -2.68
Structure conservation index 0.33
SVM decision value 0.03
SVM RNA-class probability 0.548515
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7151397 94 + 22407834
UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGCAG-AG------C-AAGACCCA---------AGACCCUUGCCG----GCUUAAAAGGCUGGCAAGAUCCGCCAA
....((((((((.(((...))).)))))))).((((-(...((..-.)------)-........---------.....(((((((----(((.....))))))))))...))))). ( -29.10)
>DroSec_CAF1 92720 92 + 1
UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGU-GAGAGCAG-AG------C-AAG--CCA---------AGACCCUUGCUG----GCUUAAAAGGCUGGCAAGAGCCGCCAA
....((((((((.(((...))).)))))))).((((-..((((..-((------(-(((--...---------.....)))))).----))))....((((......)))))))). ( -25.50)
>DroSim_CAF1 95414 93 + 1
UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGCGGAGAGCAG-GG------C-AAG--CCA---------AGACCCUUGCUG----GCUUAAAAGGCUGGCAAGAGCCGCCAA
....((((((((.(((...))).)))))))).((((((.......-((------.-...--)).---------.....(((((..----(((.....)))..)))))..)))))). ( -31.90)
>DroEre_CAF1 97814 97 + 1
UGGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGC-G-AGCGAGAGC-AAG--CCA---------AGACCCUUGCCG----GCUUAAAAGGCUGGCAAGACCCGCCAA
....((((((((.(((...))).)))))))).((((-(...((-.-.((....))-..)--)..---------.....(((((((----(((.....))))))))))...))))). ( -35.60)
>DroYak_CAF1 100918 99 + 1
CUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC-GAAAGCAG-AGCGAGCCAAGAG--CCA---------AGACCUUUGCCG----GCUUAAAAGGCUGGCAAGAGCCACCAA
....((((((((.(((...))).))))))))...((-....)).(-.(((.((.....)--)).---------.....(((((((----(((.....)))))))))).)))..... ( -25.50)
>DroPer_CAF1 113665 99 + 1
UCGAAAUUUAUAUUGGAAGCGGCUAUAAAUUAUGGG-GAGCACGGGCA------C-AAG--UCAAGAGCCCGGAGACCCCUCCAGAGGAGCUUAAAAAG-------AGUCUGCCAA
....(((((((((((....))).))))))))..(((-(....(((((.------(-...--....).)))))....))))......(((((((.....)-------)).)).)).. ( -26.10)
>consensus
UUGAAAUUUAUAUUAGAAGCUGCUAUAAAUUAUGGC_GAAAGCAG_AG______C_AAG__CCA_________AGACCCUUGCCG____GCUUAAAAGGCUGGCAAGAGCCGCCAA
..................(((((((((...))))))....)))...................................(((((((....(((.....))))))))))......... ( -9.53 = -10.40 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006