Locus 2577

Sequence ID 2L_DroMel_CAF1
Location 7,142,851 – 7,142,951
Length 100
Max. P 0.521857
window4110

overview

Window 0

Location 7,142,851 – 7,142,951
Length 100
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 89.60
Mean single sequence MFE -31.55
Consensus MFE -23.75
Energy contribution -24.75
Covariance contribution 1.00
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.75
SVM decision value -0.02
SVM RNA-class probability 0.521857
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7142851 100 + 22407834
GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUAGAAC---ACGGAGUGUGGAACGUAGUGGGGUGAAGC-CCA
.((........))((((..((((((((((((((((..((((......))))....))))))))))))(---((...((.....))...))).))))..))-)). ( -35.40)
>DroSec_CAF1 84300 97 + 1
GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUGGAAC---A----GAGUGAAACGGAGUGAGGUGAAGCCCCA
(((..((.(((((((...)))))((((((((((((..((((......))))....)))))))))))).---.----............))....))..)))... ( -28.60)
>DroSim_CAF1 87076 97 + 1
GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUGGAAC---A----GAGUGAAACGGAGUGGGGUGAAGCCCCA
.((..(....(((((...)))))((((((((((((..((((......))))....)))))))))))).---.----.........)..))((((.....)))). ( -32.20)
>DroYak_CAF1 91887 101 + 1
GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAGAAGCGCACAGAACUAAACU--GAAUGGAACGGAACGGGGUGAAGC-CCA
(((..((..(..(.(((((..((((((.(.((((((....)))))).).))))))..)))).(((.......))--).......).)....)..))..))-).. ( -30.00)
>consensus
GGCGACAAACAGCGGGCGCCGCUUUCUAUUUGUUUGCCUGCAAACACGCAGAGAAAAGCGAAUAGAAC___A____GAGUGAAACGGAGUGGGGUGAAGC_CCA
((((.(........).))))...((((((((((((.(((((......)))).)..)))))))))))).......................((((.....)))). (-23.75 = -24.75 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:05 2006