Locus 2576

Sequence ID 2L_DroMel_CAF1
Location 7,142,368 – 7,142,464
Length 96
Max. P 0.569846
window4109

overview

Window 9

Location 7,142,368 – 7,142,464
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.64
Mean single sequence MFE -32.80
Consensus MFE -15.65
Energy contribution -16.38
Covariance contribution 0.74
Combinations/Pair 1.29
Mean z-score -1.97
Structure conservation index 0.48
SVM decision value 0.07
SVM RNA-class probability 0.569846
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7142368 96 + 22407834
GGACCAAGGACUACGAGCACGCACUCUCGGGACACAGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAAAAUCCACGGCUAGAAA
((.((..(((....((((..((((((..(.....)..))))))........(((((((.......))))))).)))).....)))..))))..... ( -31.50)
>DroSec_CAF1 83821 96 + 1
GGACCAAGGACUACGAGCACGCACUCUCGGGACACGGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA
((.((..(((....((((..(((((((((.....)))))))))........(((((((.......))))))).)))).....)))..))))..... ( -36.40)
>DroSim_CAF1 86591 96 + 1
GGACCAAGGACUGCGAGCACGCACUCUCGGGACACGGGAGUGCUGAGCUUAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA
((.((..(((.((.((((..(((((((((.....)))))))))........(((((((.......))))))).))))))...)))..))))..... ( -37.50)
>DroEre_CAF1 88813 96 + 1
GGGCCGAGGACUUUAAGCACGCACUCUGGGGACUCAGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGUUUCAGCAUUCACGGCUAAAAA
.(((((((..(((..((......))..)))..)))..((((.(((((..(.(((((((.......))))))).).))))).))))..))))..... ( -32.40)
>DroYak_CAF1 91359 96 + 1
GGACCGAGCACUGUGAGCACGCACUUUAGGGACGCGGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGUUUUAGCAUUCACGGCUAGAAA
.....((((..((((....)))).....(((((......)))))..)))).(((((((.......)))))))..(((((((.......))))))). ( -30.60)
>DroPer_CAF1 103898 79 + 1
GGGCUGAGGAC------CGUGUACGGCCAGGACA-------CAUGAGCUCAUAAGCUGCCACAAAGGGCUGUGGGUCGCAC----ACGCCCACAAA
((((((.((.(------((....)))))..(((.-------....((((....)))).(((((......))))))))...)----).))))..... ( -28.40)
>consensus
GGACCAAGGACUACGAGCACGCACUCUCGGGACACGGGAGUCCUGAGCUCAUAAGCCGCAGCAAACGGCUUACGCUCCAACAUCCACGGCUAGAAA
((.((..(..((..(((......)))..))..)...(((.....((((...(((((((.......))))))).)))).....)))..))))..... (-15.65 = -16.38 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:04 2006