Locus 2574

Sequence ID 2L_DroMel_CAF1
Location 7,127,286 – 7,127,383
Length 97
Max. P 0.838648
window4106

overview

Window 6

Location 7,127,286 – 7,127,383
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 93.45
Mean single sequence MFE -14.64
Consensus MFE -14.28
Energy contribution -14.28
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.98
SVM decision value 0.74
SVM RNA-class probability 0.838648
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7127286 97 - 22407834
CUUUCUUUGCUUUCGUUGGCAACAAACAUACACAGACACACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...(((.((......(((....))).....)).)))...(((((((((.(((..(((......)))))).))))))))).................. ( -14.90)
>DroSec_CAF1 68705 89 - 1
CUUUCUUUGCUUUCGUUGGCAACAAACA--------CACACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...((((((((......)))).......--------...(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50)
>DroSim_CAF1 71476 87 - 1
CUUUCUUUGCUUUCGUUGGCAACAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...((((((((......)))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50)
>DroEre_CAF1 73601 87 - 1
CUUUCUUUGCUUUCUUGGGCAGCAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...(((((((((....))))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.80)
>DroYak_CAF1 75934 87 - 1
CUUUCUUUGCUUUCUUUGGCAGCAAACA--------C--ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...((((((((......)))).......--------.--(((((((((.(((..(((......)))))).)))))))))..........)))).... ( -14.50)
>consensus
CUUUCUUUGCUUUCGUUGGCAACAAACA________C__ACACAAAUUUGUUACGGUCCCCGCACCAAUUGAUUUGUGUUUACACAUCUAAGACAUC
...((((((((......))))..................(((((((((.(((..(((......)))))).)))))))))..........)))).... (-14.28 = -14.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:02 2006