| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,126,035 – 7,126,127 |
| Length | 92 |
| Max. P | 0.872470 |
| Location | 7,126,035 – 7,126,127 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.89 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -10.18 |
| Energy contribution | -9.34 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7126035 92 - 22407834 --AUGCAAAUUUGAAA--AAGGUAGCUGAGCUGGAAAGUAAUAUUAUUAAUGAGCUUAAGCGGCAAAAGUUGCCGACUAUGGAAA-------AGGAA-AAAAAA----- --..((...(((....--)))...))((((((.(..((((....))))..).))))))(((((((.....))))).)).......-------.....-......----- ( -15.80) >DroSec_CAF1 67522 82 - 1 --AUGCAAAUUUGAAA--AAGGUAGCUGAGCUGGAAAGUAAAAUUAUUAAUGAG------CGGAAAAAGUUGCCGACUAUGGAAA-------AGGAA---AA------- --..............--..(((((((..(((.(..((((....))))..).))------)......)))))))...........-------.....---..------- ( -12.20) >DroSim_CAF1 70262 90 - 1 --AUGCAAAUUUGAAA--AAGGUAGCUGAGCUGGAAAGUAAUAUUAUUAAUGAGCUUAGGCGGGAAAAGUUGCCGACUAUGGAAA-------AGAAA-AAAA------- --..............--..(((((((..(((....)))..............((....))......)))))))...........-------.....-....------- ( -13.70) >DroEre_CAF1 72596 98 - 1 --AUGCAAAUUUGAAAAAAAGGUAGCUGAGCUGGAAAGUAAUAUUAUUAAUGAGCUUAGGAAGAAAAAGGUGCCGAUUAUGGGAACCUCUGAAUGGAAAA--------- --.(((...(((....)))..))).(((((((.(..((((....))))..).)))))))........((((.((.......)).))))............--------- ( -15.80) >DroAna_CAF1 73148 99 - 1 AUUUGCAAAUUGCAGA-AAAGGUAGCUGACUCGGAAGGGAAUAUUAUUAAUGGGAUUAGGCCUC-UUGGCAGCCGAUUAGGAACA-------AUGAA-UCAGAAGGAUA .(((((.....)))))-........(((((((....))).......(((((.((.....(((..-..)))..)).))))).....-------.....-))))....... ( -23.00) >consensus __AUGCAAAUUUGAAA__AAGGUAGCUGAGCUGGAAAGUAAUAUUAUUAAUGAGCUUAGGCGGAAAAAGUUGCCGACUAUGGAAA_______AGGAA_AAAA_______ ....................(((((((..(((....)))....(((....)))..............)))))))................................... (-10.18 = -9.34 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:01 2006