| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,121,279 – 7,121,376 |
| Length | 97 |
| Max. P | 0.853416 |
| Location | 7,121,279 – 7,121,376 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.40 |
| Mean single sequence MFE | -17.71 |
| Consensus MFE | -11.83 |
| Energy contribution | -11.81 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7121279 97 - 22407834 ACCAAACA--GA-A-AACA-ACGGAGGA----------GGAAAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUCGGU-GAG ........--..-.-....-((.(((((----------(....((((((.((((..............)))).))))))..((((((((...)))))))))))))).))-... ( -19.64) >DroPse_CAF1 84321 90 - 1 AC-AAAUG--AA-A-AA----CGAAGG-------------CAAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUUGGG-AAG .(-((..(--((-(-..----....((-------------(.....................)))................((((((((...)))))))))))))))..-... ( -15.10) >DroWil_CAF1 112579 105 - 1 AC-AAAGA--GCAA-AAGA-AGGAAGGAACGACACAUACAAAAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUUGGC-G-- ..-.....--((..-((((-((........(((..............)))...............................((((((((...)))))))))))))).))-.-- ( -17.54) >DroMoj_CAF1 85732 95 - 1 AAUGAAAAUUUA-AAAACAAAACAAAA--------------AAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUCGGC-G-- ............-..............--------------....................((((...(((......))).((((((((...))))))))......)))-)-- ( -15.80) >DroAna_CAF1 68796 90 - 1 ----AAAA--GC-G-AACA-GCGGAGG--------------AAAAAAUUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUCGGUUGUG ----....--..-.-.(((-((.((((--------------((.............(((((.......)))))........((((((((...)))))))))))))).))))). ( -23.10) >DroPer_CAF1 75109 90 - 1 AC-AAAUG--AA-A-AA----CGAAGG-------------CAAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUUGGG-AAG .(-((..(--((-(-..----....((-------------(.....................)))................((((((((...)))))))))))))))..-... ( -15.10) >consensus AC_AAAAA__GA_A_AACA_ACGAAGG______________AAAAAAGUCAUUAUCAAUUACGCCACUUAAUUAUUUUUAUUGGAGCAUAAAAUGCUCCAUUUCUCGGC_GAG ......................((((.................((((((.((((..............)))).))))))..((((((((...))))))))))))......... (-11.83 = -11.81 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:59 2006