Locus 2570

Sequence ID 2L_DroMel_CAF1
Location 7,119,870 – 7,119,960
Length 90
Max. P 0.986403
window4102

overview

Window 2

Location 7,119,870 – 7,119,960
Length 90
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 76.04
Mean single sequence MFE -31.54
Consensus MFE -20.82
Energy contribution -20.42
Covariance contribution -0.40
Combinations/Pair 1.19
Mean z-score -2.23
Structure conservation index 0.66
SVM decision value 2.04
SVM RNA-class probability 0.986403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7119870 90 + 22407834
UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUCAAAAACUGGAC
...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -33.50)
>DroPse_CAF1 82793 96 + 1
UCCAAUCGCCGGCAACAUGUUGCCCACUGGCAGCCACAAUGUUGCCUCAACAUGGAUGAUAUACGAGACGAGCGUUUUUCGGGCUCU---AAACUUGUG
((((......((((((((((((((....))))))....))))))))......)))).....((((((..((((.(.....).)))).---...)))))) ( -30.80)
>DroSec_CAF1 61392 90 + 1
UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUUAAAAACUGGAC
...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -31.30)
>DroSim_CAF1 63690 90 + 1
UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU------GGGAGGAU---CGAGAUGAUGAAUUGCAGGUCACUUAAAAACUGGAC
...((((..(((((((((((((((....))))))....))))))))------).((((((---(..(((.....)))...)))).))).......)))) ( -31.30)
>DroPer_CAF1 73567 96 + 1
UCCAAUCGCCGGCAACAUGUUGCCCACUGGCAGCCACAAUGUUGCCUCAACAUGGAUGAUAUACGAGACGAGCGUUUUUCGGGCUCU---AAACUUGUG
((((......((((((((((((((....))))))....))))))))......)))).....((((((..((((.(.....).)))).---...)))))) ( -30.80)
>consensus
UCUGUCCUGCGGCAACAUGUUGCCGAUGGGCAGCUACAAUGUUGCU______GGGAGGAU___CGAGAUGAUGAAUUGCAGGUCACU_AAAAACUGGAC
.....(((((((((((((((((((....))))))....)))))))).................((...)).......)))))................. (-20.82 = -20.42 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:58 2006