Locus 2568

Sequence ID 2L_DroMel_CAF1
Location 7,113,810 – 7,113,901
Length 91
Max. P 0.576507
window4100

overview

Window 0

Location 7,113,810 – 7,113,901
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 85.19
Mean single sequence MFE -17.43
Consensus MFE -13.80
Energy contribution -13.97
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.576507
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7113810 91 + 22407834
GCAAGAAAAUAAAAAAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGGUUAUGUUUC
.......................((((.(....).)))).((((.....(((((((((.(((((....))))))))).)))))...)))). ( -18.00)
>DroSec_CAF1 55372 90 + 1
GCAGGAAAAUAAA-AAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC
.............-...((....))..(((.(((((((..((((....((((...))))(((((....)))))))))))))))).)))... ( -18.30)
>DroSim_CAF1 57353 90 + 1
GCAGGAAAAUAAA-AAACCAAAAGGCUACAAAAGCAGUCAAAGCCAAAUGCCAGAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC
.............-...((....))..(((.(((((((..((((....((((...))))(((((....)))))))))))))))).)))... ( -16.90)
>DroEre_CAF1 60458 91 + 1
GCAGGAAAAUGCAAAAAACAAAAGGCUACAAAAGCAGCCAAAGCCAAAGGCCAAAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC
(((......)))...............(((.(((((((....(((...)))...((((.(((((....)))))))))))))))).)))... ( -21.30)
>DroYak_CAF1 62286 84 + 1
GCAGGAAAAUAAAAAAAAGA-------ACAAAAGCGGGCAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGCUUUCUGCUUAUGUUGC
...................(-------(((.(((((((((........)))).(((((.(((((....)))))))))).))))).)))).. ( -17.00)
>DroAna_CAF1 59891 89 + 1
ACAAAAAAAGGCGAAAAU--ACAUGCCACAAAAGCAACAAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGUUCGCUGCUUAUACUUU
.........((((((...--((.(((.......)))......(((..........))).........)).....))))))........... ( -13.10)
>consensus
GCAGGAAAAUAAAAAAACCAAAAGGCUACAAAAGCAGCCAAAGCCAAAUGCCAAAGGCGAUAAAAUAGUUUAUGCUUGCUGCUUAUGUUUC
...........................(((.(((((((..((((.....(((...))).(((((....)))))))))))))))).)))... (-13.80 = -13.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:56 2006