Locus 2566

Sequence ID 2L_DroMel_CAF1
Location 7,105,179 – 7,105,287
Length 108
Max. P 0.940306
window4098

overview

Window 8

Location 7,105,179 – 7,105,287
Length 108
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 87.08
Mean single sequence MFE -17.38
Consensus MFE -15.60
Energy contribution -15.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 0.90
SVM decision value 1.31
SVM RNA-class probability 0.940306
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7105179 108 - 22407834
CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCAUUCCUCUUUCCCCUACCC-CUCUUCCACUUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC---
..((((((((((((((((.......((((........................-.....)))).....))))))...))).........))))))).............--- ( -18.35)
>DroSec_CAF1 47176 101 - 1
CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCU-------CCC-CUCUUCACUCUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC---
..((((((((((((((((.......((((..............-------...-....))))......))))))...))).........))))))).............--- ( -16.92)
>DroSim_CAF1 48872 105 - 1
CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCC-------CCCUCUCUUCACUCUCAUGCCAUUUUCAGACUAUUUUCCGUUCCCUUCUUGCCAGAACCACC
..((((((((((((((((.......((((..............-------........))))......))))))...))).........)))))))................ ( -16.87)
>consensus
CCAGGGAACUCUAGUGGCCAUCAUUGUGGUCUUCUUCACUCCU_______CCC_CUCUUCACUCUCAUGCCAUUUUCAGACAAUUUUCCGUUCCCUUCUUGCCAGAACC___
..(((((((......((((((....))))))...............................................((......)).)))))))................ (-15.60 = -15.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:54 2006