| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,104,927 – 7,105,028 |
| Length | 101 |
| Max. P | 0.619419 |
| Location | 7,104,927 – 7,105,028 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.13 |
| Mean single sequence MFE | -30.73 |
| Consensus MFE | -18.83 |
| Energy contribution | -19.86 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7104927 101 - 22407834 GAUGAAG---AAGCAGGACAGUCGUGCAGUUGAG---------GAAGCUGCAGCAGA-AGUUGCAAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCUGG .......---........(((((((((((((...---------..)))))))((.((-.(((((.........))))))).))..((((.((((....)))).)))))))))). ( -30.70) >DroSec_CAF1 46927 101 - 1 GAUGAAG---AAGCAGGACAGUC-UGCAGUUGAG---------GAAGCUACAGCAGAAAGUUGCCAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG .......---..(((((....))-))).((((((---------....)).))))....(((((((......).))))))..((.(((((.((((....)))).))))).))... ( -27.90) >DroSim_CAF1 47690 101 - 1 GAUGAAG---AAGCAGGACAGUC-UGCAGUUGAG---------GAAGCUGCAGCAGAAAGUUGCCAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG ..(((..---..........(.(-(((((((...---------..))))))))).....((((((......).))))))))((.(((((.((((....)))).))))).))... ( -29.60) >DroEre_CAF1 51130 109 - 1 GAUGAAG---AAGCAGGACAGUC-UGCAGCUGAGGAAGCUGAGGAAGCUGCAGGAGA-ACUUGCCAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG .......---..(((((....((-(((((((.((....)).....)))))))))...-.)))))...(((.......))).((.(((((.((((....)))).))))).))... ( -34.90) >DroYak_CAF1 53538 100 - 1 GAUGAGG---AUGCAGGACAGUC-UGCAGUUGAG---------GAAGCUGCAGGAGA-ACUUGCCAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG ..((((.---..(((((....((-(((((((...---------..)))))))))...-.))))).....(....)..))))((.(((((.((((....)))).))))).))... ( -33.90) >DroPer_CAF1 56978 89 - 1 UCUGGAGAAGAGACAGCACGAGC-UUCGG--GGG---------GG-------------AGCGGGAGCGGGGGCCCAUCUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG ....((((.......((.(..((-(((..--...---------))-------------)))..).))((....)).)))).((.(((((.((((....)))).))))).))... ( -27.40) >consensus GAUGAAG___AAGCAGGACAGUC_UGCAGUUGAG_________GAAGCUGCAGCAGA_AGUUGCCAGGAGGGAGCAACUCAGCGGUUUGUCAUUGAGAGGUGUCAAGUGGCAGG ............((((........(((((((..............)))))))........))))...(((.......))).((.(((((.((((....)))).))))).))... (-18.83 = -19.86 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:53 2006