Locus 2564

Sequence ID 2L_DroMel_CAF1
Location 7,092,767 – 7,092,858
Length 91
Max. P 0.868785
window4096

overview

Window 6

Location 7,092,767 – 7,092,858
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 95.75
Mean single sequence MFE -18.28
Consensus MFE -16.08
Energy contribution -16.27
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.88
SVM decision value 0.86
SVM RNA-class probability 0.868785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7092767 91 + 22407834
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA
.((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29)
>DroSec_CAF1 34772 91 + 1
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA
.((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29)
>DroSim_CAF1 35244 91 + 1
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAUGCGCUAAUA
.((((((((........((((......))))........))))))))((.(((.(((...(((.....))).))).....))).))..... ( -18.89)
>DroEre_CAF1 38838 91 + 1
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUAAAGAGGUGGUAAUAAAAAGCGCUAAUA
.((((((((........((((......))))........))))))))(((....)))...........((((.(.......).)))).... ( -18.29)
>DroYak_CAF1 39868 91 + 1
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAACCUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA
.((((((((.....(((((((......)))..))))...))))))))(((....)))...........((((.(.......).)))).... ( -20.70)
>DroAna_CAF1 37742 91 + 1
AGUCAGUGUGAAAUGCUUUUCAUAAAGGAAGUAAACCAAACACCGGCGCACAUAUGCAAAACUUAAGAGGUGGUAAUGAAAAGAGCUAAUA
.(((.((((....(((((((......)))))))......)))).)))(((....))).............((((..(....)..))))... ( -15.20)
>consensus
AGUCAGUGUGAAAUGGUUUUCAUAAAGGAAGUAAACUGAGCACUGGCGCACAUAUGCAAAACUUAAAAGGUGGUAAUAAAAAGCGCUAAUA
.((((((((........((((......))))........))))))))(((....)))...........((((...........)))).... (-16.08 = -16.27 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:52 2006