Locus 2560

Sequence ID 2L_DroMel_CAF1
Location 7,077,707 – 7,077,801
Length 94
Max. P 0.986323
window4091

overview

Window 1

Location 7,077,707 – 7,077,801
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.81
Mean single sequence MFE -21.86
Consensus MFE -18.14
Energy contribution -18.70
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.18
Structure conservation index 0.83
SVM decision value 2.04
SVM RNA-class probability 0.986323
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7077707 94 + 22407834
GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCAAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACGACUCAUAAAAUG
((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ ( -22.50)
>DroSec_CAF1 19512 94 + 1
GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCUAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACUACUCAUAAAAUG
((((......))))(((((((.((((.(((((......))))).)))).)))...((((((((.......))))))))....))))........ ( -23.50)
>DroSim_CAF1 19682 94 + 1
GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCGAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACUACUCAUAAAAUG
((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ ( -22.40)
>DroEre_CAF1 23427 92 + 1
GAGUUCAGUGGCUCGAGUUUAUUGAAUGAUUACACAGCAAAUCUUUCAUUGAAAAUAAUGAAUACAAUGCAUUCAUG--ACGACUCAUCAAAUA
((((......))))(((((...((((((......).(((.....(((((((....))))))).....))))))))..--..)))))........ ( -17.10)
>DroYak_CAF1 24171 94 + 1
GAGUUCAGUGGCUGGAGUUCAUUGAGUGACUACACUGCUAAUCUUUCAUUGAAAAGAAUGAAUAAAAUUCAUUCAUGCUACGACUCAUUAAAUG
(((((..(((((.....((((.((((.((.((......)).)).)))).))))..((((((((...))))))))..))))))))))........ ( -23.80)
>consensus
GAGUUCAGUGGCUCGAGUUCAUUGAAUGAUUACACUGCAAAUCUUUCAUUGAAAAGCAUGAAUACAAUUCAUUCAUGUGACGACUCAUAAAAUG
((((......))))(((((((.((((.((((........)))).)))).)))...((((((((.......))))))))....))))........ (-18.14 = -18.70 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:47 2006