Locus 2559

Sequence ID 2L_DroMel_CAF1
Location 7,074,563 – 7,074,657
Length 94
Max. P 0.578190
window4090

overview

Window 0

Location 7,074,563 – 7,074,657
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 77.25
Mean single sequence MFE -16.82
Consensus MFE -9.40
Energy contribution -10.07
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -1.62
Structure conservation index 0.56
SVM decision value 0.09
SVM RNA-class probability 0.578190
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7074563 94 - 22407834
AGAAAAAAUGGCACAAAUGUUUUAAUAUUUUAUGGGUGAAAAAAAUGUAUGUGUAACAGCAGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG
..........((((((........(((((((.(......).))))))).((((((..(((...)))..)))))))))))).............. ( -16.90)
>DroSec_CAF1 16433 93 - 1
AGAAAAAAUGGCACAAAUGUUUUAAUACUUUAUGGGUGAAA-AAAUGCAUGUGUAACAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG
..........((((((.(((.....(((..((((.((....-..)).)))).)))...((((.....))))))))))))).............. ( -18.30)
>DroSim_CAF1 16617 93 - 1
AGAAAAAAUGGCACAAAUAUUUUAAUACUUUAUGGGUGAAA-AAAUGCAUGUGCAAGAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG
..........((((((.((((((..((((.....))))..)-)))))..((((((..(((...)))..)))))))))))).............. ( -21.50)
>DroEre_CAF1 20269 91 - 1
AGAAAAAAUGGCACAGCGUUUUUAAUACUUUAUGGGUGAAA-AAAU--AUGUGUAAAUGCGGGGCUCCUGCACAUUGUGCAAUAAUAAUGAAAG
..........(((((..((((((..((((.....)))).))-))))--.)))))...((((((...))))))((((((......)))))).... ( -19.80)
>DroYak_CAF1 20235 91 - 1
AGAAAAAACGGCGAAAUUUUUGUAAUAUUUUAUGGGUGAAA-AAAU--AUGCGCAAAAGCGGAGCUCCUGCACAUUGUGCAAUAAUAAUGAGAG
.................((((((.(((((((.........)-))))--))..))))))((((.....)))).((((((......)))))).... ( -14.80)
>DroPer_CAF1 21350 72 - 1
A---CAAUUUCCACAAAAUGGUAAAUGUUUCAUGGGGAGUAAAACC--AUAUG----------------GCA-AUAGUGCAAUAAUAAUGAAAG
.---..(((((((.....))).)))).((((((.((........))--.(((.----------------(((-....))).)))...)))))). (  -9.60)
>consensus
AGAAAAAAUGGCACAAAUUUUUUAAUACUUUAUGGGUGAAA_AAAU__AUGUGUAAAAGCGGAGCUACUGCACAUUGUGCAAUAAUAAUGAAAG
..........((((((.........((((.....))))...........((((((..(((...)))..)))))))))))).............. ( -9.40 = -10.07 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:46 2006