| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,072,230 – 7,072,322 |
| Length | 92 |
| Max. P | 0.703019 |
| Location | 7,072,230 – 7,072,322 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -19.05 |
| Energy contribution | -20.58 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7072230 92 - 22407834 UC-------CCACCCCAUUUUCCA-------GCGCCCCUGAAAGCCCUGUGUUUUCAGUACUCCUGGCUUGUUGAGCCA-GAGCCGCUUGAAUUAUUCAUGUGGCUG ..-------...............-------......((((((((.....)))))))).....(((((((...))))))-)((((((.(((.....))).)))))). ( -28.50) >DroSec_CAF1 14151 97 - 1 UC-------CC--CCCAUUUUCCAGGCCACCGCGCCACUGAAAGCCCUGUGUUUUCAGUACUCCUGGCUUGUUGAGCCA-GAGCCCCUUGAAUUAUUCAUGUGGCUG ..-------..--...........(((......)))(((((((((.....)))))))))....(((((((...))))))-)((((.(.(((.....))).).)))). ( -30.00) >DroSim_CAF1 14302 97 - 1 UC-------CA--CCCAUUUUCCAGGCCACCGCGCCACUGAAAGCCCUGUGUUUUCAGUACUCCUGGCUUGUUGAGCCA-GAGCCCCUUGAAUUAUUCAUGUGGCUG ..-------..--...........(((......)))(((((((((.....)))))))))....(((((((...))))))-)((((.(.(((.....))).).)))). ( -30.00) >DroEre_CAF1 17885 104 - 1 UCCACACAGCC--CCCAUUUUCCAGCCCACCGCGCCUCUGAAAGCCCUGUGUUUUCAGUGCUCCUGGCUUGUUGAGCCA-GAGCCCCUUGAAUUAUUCAUGUGGCUG ...........--.........(((((((..((((..((((((((.....)))))))).))..(((((((...))))))-).))....(((.....))))).))))) ( -29.70) >DroYak_CAF1 17772 95 - 1 ---------CC--CGCAUUUUCCAAGCCACCGCUCCUCUGAAAGCCCUGUGUUCCCAGUGCUCCUGGCUUGUUGAGCCA-GAGCCCCUUGAAUUAUUCAUGUGGCUG ---------..--...........((((((.((((.......(((.(((......))).)))..((((((...))))))-))))....(((.....))).)))))). ( -25.80) >DroAna_CAF1 17155 88 - 1 U------------------AUGCC-GCCACCCCCCUUUGGCCGGUCAUGAGUUUCCAGUCCUCGUGGCUUGUUGAGCUAGGAGCCCCUUGAAUUAUUCAUGUGGCUG .------------------..(((-((((........))))....((((((((((.((..(((.((((((...)))))).)))...)).)))..))))))).))).. ( -27.30) >consensus UC_______CC__CCCAUUUUCCAGGCCACCGCGCCUCUGAAAGCCCUGUGUUUUCAGUACUCCUGGCUUGUUGAGCCA_GAGCCCCUUGAAUUAUUCAUGUGGCUG ........................((((((.......((((((((.....))))))))..(((.((((((...)))))).))).................)))))). (-19.05 = -20.58 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:45 2006