Locus 2556

Sequence ID 2L_DroMel_CAF1
Location 7,064,186 – 7,064,280
Length 94
Max. P 0.610746
window4086

overview

Window 6

Location 7,064,186 – 7,064,280
Length 94
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.25
Mean single sequence MFE -29.67
Consensus MFE -19.49
Energy contribution -18.69
Covariance contribution -0.80
Combinations/Pair 1.40
Mean z-score -1.29
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.610746
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7064186 94 + 22407834
UCCCGCCGAAGGUUGGA----CGCA-------AUAAUGUGGUGGUACAUCGGCAGUUUCUAA-UCACUUUCAUUGUAGAUUUCCGCGUUGGCGACGACGAGGAAGA
..((((((...((((..----..))-------))....))))))((((..((.(((......-..))).))..))))..(((((.(((((....))))).))))). ( -28.00)
>DroSec_CAF1 7027 94 + 1
UCCCGCCGAAGGUUGGU----CACU-------AUAAUGUGGUGGUACAUCGGCAUUUUCUAA-UGACUAUCAUUGUAGAUUUCCGCGUUGGCGACGAUGAGGAAGA
..(((.(....).))).----..((-------(((..((((((((.(((..(......)..)-))))))))))))))).(((((.(((((....))))).))))). ( -28.00)
>DroSim_CAF1 6750 94 + 1
UCCCGCCGAAGGUUGGU----CACU-------AUAAUGUGGUGGUACAUCGGCAUUUUCUAA-UGACUAUCAUUGUAGAUUUCCGCGUUGGCGACGACGAGGAAGA
..(((.(....).))).----..((-------(((..((((((((.(((..(......)..)-))))))))))))))).(((((.(((((....))))).))))). ( -29.80)
>DroEre_CAF1 7007 91 + 1
UCCCGCCGAAGGUUGGU----CACU-------GUAAUGUG---UAACAUCGGCAGUUUCUAA-CCAUUUUCAUUGCAGAUUUCCGUGUUGGCGACGAUGAGGAGGA
..((.((...((((((.----.(((-------((.(((..---...)))..)))))..))))-))....((.((((.(((......))).)))).))...)).)). ( -25.70)
>DroYak_CAF1 6855 91 + 1
UCCCGCCGAAGGUUGGU----CACU-------GUAAUGUG---GUACAUCGGCAGUUUGUAA-UAAUUUUUAUUGCAGAUUUCCGUGUUGGCGACGACGAGGAGGA
..(((((((..((...(----(((.-------.....)))---).)).)))))(((((((((-((.....)))))))))))(((.(((((....))))).))))). ( -31.00)
>DroPer_CAF1 7362 106 + 1
UCCGGCUGAAGGUGAGACCGCCGCUUUUGGCUUCCAUUCCAUUCCAGAGCAGCAAUUGCAAAAACAUUGUUAUUGCAGACUUCCGUGUCGGCGACGACGAGGAGGA
...(((..((((((.......))))))..)))...................(((((.((((.....)))).)))))...(((((.(((((....))))).))))). ( -35.50)
>consensus
UCCCGCCGAAGGUUGGU____CACU_______AUAAUGUGGUGGUACAUCGGCAGUUUCUAA_UCACUUUCAUUGCAGAUUUCCGCGUUGGCGACGACGAGGAAGA
....(((((....((......(((.............)))......)))))))..........................(((((.(((((....))))).))))). (-19.49 = -18.69 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006