| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,056,239 – 7,056,346 |
| Length | 107 |
| Max. P | 0.698500 |
| Location | 7,056,239 – 7,056,346 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.78 |
| Mean single sequence MFE | -34.54 |
| Consensus MFE | -25.35 |
| Energy contribution | -26.28 |
| Covariance contribution | 0.93 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7056239 107 + 22407834 UUCGAAAAUACCAAACC-UAGC-----------UGCAUGCAGCCAAGUGCGAUGCUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------(((..((((.....(((((....)))))...))))-..(((.....)))..((((..((((....))).)..)))))))))...... ( -37.60) >DroSec_CAF1 24861 107 + 1 UUUGAAAAUACCAAACC-AAGC-----------UGCUUGCAGCCAAAAGCGAUACUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------((....)))).........((((((((........-..(((.....))).(((((..((((....))).)..)))))..)))))))) ( -34.90) >DroSim_CAF1 24445 107 + 1 UUUGAAAAUACCAAACC-AAGC-----------UGCUUGCAGCCAAAAGCGAUACUUUGCAACACUGC-CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA .................-..((-----------((....)))).........((((((((........-..(((.....))).(((((..((((....))).)..)))))..)))))))) ( -34.90) >DroEre_CAF1 25684 119 + 1 UUCGAAAAUACCAAAACCUACCGCAACUGUUAGUGCUUGCAGCCGAGUGCGAAACUGUUCAACACUGC-UACCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAGGUA ...............((((...(.(((.(((.(..((((....))))..)..))).))))..(.((((-...((.....))...((((..((((....))).)..)))))))).))))). ( -33.90) >DroYak_CAF1 25763 106 + 1 UUCAAAAAUACCAAAACCUACCGCAACUUUUAG--------------UGCGAAACUUUGCAACACUGCCCACCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAGGUA .....................((((........--------------))))..(((((((.....((((..........))))(((((..((((....))).)..)))))..))))))). ( -31.40) >consensus UUCGAAAAUACCAAACC_UAGC___________UGCUUGCAGCCAAAUGCGAUACUUUGCAACACUGC_CAGCCAUUUCGGCACGUGCUGGGUGUGGACACACUGGCACGCAGCGAAGUA ..................................((((........))))...(((((((...........(((.....))).(((((..((((....))).)..)))))..))))))). (-25.35 = -26.28 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006