Locus 2552

Sequence ID 2L_DroMel_CAF1
Location 7,052,650 – 7,052,747
Length 97
Max. P 0.500000
window4077

overview

Window 7

Location 7,052,650 – 7,052,747
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 85.02
Mean single sequence MFE -39.07
Consensus MFE -27.49
Energy contribution -27.88
Covariance contribution 0.39
Combinations/Pair 1.19
Mean z-score -2.25
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7052650 97 - 22407834
GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUUGACAGAGUUUUAACUCCCAGAGAUUGAUUGCUACCGC
((((..((((....))))..(((((.......))))).(((((((((((((((((........)))))))))))))))))........))))..... ( -38.50)
>DroPse_CAF1 24784 97 - 1
GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCGGACUGGGAGUUGAGGCUCUCGUUGCUGAGAGUUUUAACGCCCAACGACUGAUUGCCACCGC
((((..((((....))))...((....))(((((((...((((.(((((((((((((....))))))))))))).)))).))).))))))))..... ( -39.70)
>DroSec_CAF1 21273 97 - 1
GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUUGACAGAGUUUUAACUCCCAGAGAUUGAUUGCUACCGC
((((..((((....))))..(((((.......))))).(((((((((((((((((........)))))))))))))))))........))))..... ( -38.50)
>DroMoj_CAF1 24209 95 - 1
GGCACGCCAGAAGGCUGCGCCGGAUAGCCAUCAUCCGACUGCGAGUUAAGGCUUUCGCUUGAGAGCGUCUUCAGGCCCAGCGAAUUGCUGCUGCC--
((((.(((.((((((..((((((((.......)))))...))).......((((((....)))))))))))).))).((((.....)))).))))-- ( -35.60)
>DroAna_CAF1 20541 97 - 1
GGCACACCAGAAGGCUGGGCUGGGUAGCCGUCAUCGGACUGGGAGUUGAGACUUUCGUUGGAUAGAGUUUUAACGCCCAGUGAUUGAUUGCUACCGC
..((..((((....))))..))((((((.((((....((((((.(((((((((((........))))))))))).))))))...)))).)))))).. ( -42.40)
>DroPer_CAF1 24401 97 - 1
GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCGGACUGGGAGUUGAGGCUCUCGUUGCUGAGAGUUUUAACGCCCAACGACUGAUUGCCACCGC
((((..((((....))))...((....))(((((((...((((.(((((((((((((....))))))))))))).)))).))).))))))))..... ( -39.70)
>consensus
GGCACACCAGAGGGCUGGGCUGGAUAACCGUCAUCCGACUGGGAGUUGAGACUCUCGCUGGAGAGAGUUUUAACGCCCAGCGAUUGAUUGCUACCGC
((((..((((....))))...((....))((((((...(((((.(((((((((((........))))))))))).))))).)).))))))))..... (-27.49 = -27.88 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006