Locus 2551

Sequence ID 2L_DroMel_CAF1
Location 7,048,809 – 7,048,899
Length 90
Max. P 0.741618
window4076

overview

Window 6

Location 7,048,809 – 7,048,899
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -22.95
Consensus MFE -13.72
Energy contribution -13.75
Covariance contribution 0.03
Combinations/Pair 1.07
Mean z-score -2.15
Structure conservation index 0.60
SVM decision value 0.45
SVM RNA-class probability 0.741618
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7048809 90 + 22407834
AUUCGUGGAAAUACGAAUCUCAGAAUCUCAGAAUAGGUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA
.((((((....))))))(((((.....(((...((((..(((..((((((((....))))))))..))).))))....))).)))))... ( -24.20)
>DroPse_CAF1 20743 78 + 1
-UUCGUGGAAAUUUG--UCU---------CGGUCUUGUACGCGGAAAAUUACCCACGUAGUUUUCCGCGCCCUAUUCAUGAAUGGGAUUA
-.(((.(((......--)))---------))).......(((((((((((((....))))))))))))).((((((....)))))).... ( -25.00)
>DroEre_CAF1 17975 79 + 1
GUUCUUGGAAAUACG--UCU---------GAAAUAGCUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA
((((.(((......(--(.(---------((((.((((((((.(........).))))))))))))).)).....))).))))....... ( -19.60)
>DroYak_CAF1 18056 79 + 1
AUUCGUGGAAAAACG--UCU---------GAAAUAGCUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA
((((((((......(--(.(---------((((.((((((((.(........).))))))))))))).)).....))))))))....... ( -23.20)
>DroAna_CAF1 16700 79 + 1
AUUCGCGGAAUUCUG--UAU---------CAAUGUGGUACGCGGAAAAUUCCCCGGGUAGUUUUUCGCGCCCUAUUCAUGAAUGGGAUUA
........(((((((--(.(---------((..((((..(((((((((((((...)).)))))))))))..))))...))))))))))). ( -23.60)
>DroPer_CAF1 20334 78 + 1
-UUCGUGGAAAUUUG--UCU---------CGGUCUUGUACGCGGAAAAUUACCCACGUAGUUUUUCGCGCCCUAUUCAUGAAUGGGAUUA
-.(((.(((......--)))---------))).......(((((((((((((....))))))))))))).((((((....)))))).... ( -22.10)
>consensus
AUUCGUGGAAAUACG__UCU_________CAAAUAGGUACGCAGAAAAUUACCCGCGUAGUUUUUCGCGCCCUAACCAUGAAUGGGAUUA
.......................................(((.(((((((((....))))))))).)))(((...........))).... (-13.72 = -13.75 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006