Locus 2549

Sequence ID 2L_DroMel_CAF1
Location 7,043,400 – 7,043,507
Length 107
Max. P 0.549320
window4074

overview

Window 4

Location 7,043,400 – 7,043,507
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -22.94
Consensus MFE -9.66
Energy contribution -11.30
Covariance contribution 1.64
Combinations/Pair 1.14
Mean z-score -2.16
Structure conservation index 0.42
SVM decision value 0.03
SVM RNA-class probability 0.549320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7043400 107 - 22407834
UAAAAUUGAUCACUUCCACAUGGAUUGUUUUUUUUGUUCCAGCCUGACCUUUGCGCUUUGUUUAUUUGUGUUCUUAACACAGAGAUACAAAUUAGCAUCUGUUAGGA
(((((..(((....(((....)))..)))..)))))......((((((...(((..(((((...(((((((.....)))))))...)))))...)))...)))))). ( -26.40)
>DroSec_CAF1 12095 100 - 1
UAAAGUUGAUCACUUCCACGUGGAUUGUUUUU-----UCCAGCCUGACCUUUG--CUUUGUUUAUUUGUGUUCUUAGCACAGAUAUACAAAUAAGCAUCUGUAAGGA
....((.((.....)).)).((((........-----)))).(((.((...((--((((((.(((((((((.....))))))))).)))...)))))...)).))). ( -25.20)
>DroSim_CAF1 12062 100 - 1
UACAAUUGAUCACUUCCACAUGGAUUGUUUUU-----UCCAGCCUGACCUUUG--CUUUGUUUAUUUGUGUUCUUAGCACAGAUAUACAAAUUAGCAUCUGUAAGGA
....................((((........-----)))).(((.((...((--((((((.(((((((((.....))))))))).))))...))))...)).))). ( -24.40)
>DroEre_CAF1 12436 81 - 1
--AAAUUGAUCACAUCCACAUGGAUUGAU---------------GGACCUUUG--CUCUGCUUAUUUGUGUUCUUAGCAGAGUGCUACAAAUUAGCAUCU-------
--...((.((((.((((....))))))))---------------.)).....(--(((((((.............))))))))((((.....))))....------- ( -21.92)
>DroYak_CAF1 12332 99 - 1
CAAAAUUGAUCACUUCCACAUGUUUUGUUU-U-----UCCAGCCUGACCUUUG--CUUUGUUUACUUGUGUGCUUAGCAGAGUGCCACAAAUUAGCAUCUGUAAGGA
((((((.((.....)).....))))))...-.-----...........(((((--(..((((...(((((..(((....)))..).))))...))))...)))))). ( -16.80)
>consensus
UAAAAUUGAUCACUUCCACAUGGAUUGUUUUU_____UCCAGCCUGACCUUUG__CUUUGUUUAUUUGUGUUCUUAGCACAGAGAUACAAAUUAGCAUCUGUAAGGA
..............(((....))).......................((((.......((((.(((((((((((......))).)))))))).)))).....)))). ( -9.66 = -11.30 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:31 2006