Locus 2548

Sequence ID 2L_DroMel_CAF1
Location 7,043,229 – 7,043,324
Length 95
Max. P 0.918691
window4073

overview

Window 3

Location 7,043,229 – 7,043,324
Length 95
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 86.27
Mean single sequence MFE -28.85
Consensus MFE -21.46
Energy contribution -22.15
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -2.28
Structure conservation index 0.74
SVM decision value 1.12
SVM RNA-class probability 0.918691
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7043229 95 + 22407834
UGUUUGUUUGCAUUAGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU---
((((((((..(.(((.(((((((((((........(((((.-------...))))))))))))----)))).))).(((....))))..)))))))).........--- ( -29.20)
>DroSec_CAF1 11924 95 + 1
UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU---
((((((((..(.....(((((((((((........(((((.-------...))))))))))))----)))).....(((....))))..)))))))).........--- ( -29.00)
>DroSim_CAF1 11891 95 + 1
UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUCACCAU---
((((((((..(.....(((((((((((........(((((.-------...))))))))))))----)))).....(((....))))..)))))))).........--- ( -29.00)
>DroEre_CAF1 12256 107 + 1
UGUUUGUUUGCAUUGGGUGUGUGUU--CUUUCGAUUGUACAUAGUAAAUAUGUACAUGCAUACAUAAAUAUGUACAUAUGUGCGCGGUGGUCAGACAAUUUACCACGUA
...((((((((((((.((((((((.--........((((((((.....)))))))).))))))))......((((....)))).)))))..)))))))........... ( -28.20)
>consensus
UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA_______UAUGUACAUGCAUAC____AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU___
((((((((..(..........((((((........)))))).......((((((((((..((..........))..)))))))))))..))))))))............ (-21.46 = -22.15 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:29 2006