Locus 2547

Sequence ID	2L_DroMel_CAF1
Location	7,041,214 – 7,041,308
Length	94
Max. P	0.649609

overview

Window 2

Location	7,041,214 – 7,041,308
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	75.70
Mean single sequence MFE	-18.86
Consensus MFE	-8.64
Energy contribution	-11.40
Covariance contribution	2.76
Combinations/Pair	1.05
Mean z-score	-1.84
Structure conservation index	0.46
SVM decision value	0.24
SVM RNA-class probability	0.649609
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7041214 94 - 22407834
UGAACACAGCCUGAAUCAAAUCGCACUUUAAAUAAUAUUUCAAGUUUACAAAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC
........((.((((.......................)))).((((....((((.((((.((((....)))).))))))))...))))))... ( -13.50)
>DroSec_CAF1 9835 94 - 1
UGAACAGAGCCCGAAUCAAAUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC
......................((.((((((......))))))(((((((.((((.((((.((((....)))).)))))))))))))))))... ( -25.50)
>DroSim_CAF1 9859 93 - 1
UGAACAGAGCCCGAAUCAAGUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUCCGUUCAAAUGAUUGAGUCAUGGA-AACGCAAC
.((...((.......))...))((.((((((......))))))..(((((.((((.((((..(((....)))..)))))))))))-)).))... ( -19.10)
>DroEre_CAF1 10260 88 - 1
UAAAUAGUGCAUCGAACAAGUCUCAGUUCAAAUAAUAUUUAAGACUUCUCGAUGAUCUCAUUCGUU------AUCUAGUCAUGGAAAACGCACU
.....((((((((((..((((((.((............)).)))))).)))))..........(((------.((((....)))).)))))))) ( -19.40)
>DroYak_CAF1 10076 79 - 1
--------GCCUCGAACAAGUGUC-GUUUAAAAAAUAGUAAAGGUUUUUCGAUGAUCUCAUUCGCA------AUUGAGUCAUGGAAAACGCACU
--------..........((((.(-((((..(((((.......)))))((.((((.((((......------..)))))))).))))))))))) ( -16.80)
>consensus
UGAACAGAGCCUGAAUCAAGUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC
...........................................(((((((.((((.((((.((((....)))).)))))))))))))))..... ( -8.64 = -11.40 +   2.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006