Locus 2544

Sequence ID 2L_DroMel_CAF1
Location 7,031,548 – 7,031,665
Length 117
Max. P 0.930040
window4067

overview

Window 7

Location 7,031,548 – 7,031,665
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.95
Mean single sequence MFE -44.95
Consensus MFE -29.50
Energy contribution -28.45
Covariance contribution -1.05
Combinations/Pair 1.41
Mean z-score -2.13
Structure conservation index 0.66
SVM decision value 1.20
SVM RNA-class probability 0.930040
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7031548 117 - 22407834
GACAUCCGCCAAGGAGGCAGAGAAUGUAGAGCGUCUGUUCUACGAGAUUGCCGCCGAAUUGAUUGGUCAGGCAAGGAGCAAGGAUGGCAGUAGUUCGGCC---GCAGCGGCAGCCGCCCA
..((((((((.....)))......((((((((....))))))))...((((((((((.....)))))..))))).......)))))......(..((((.---((....)).))))..). ( -40.80)
>DroVir_CAF1 1464 114 - 1
AACAUCCGCCAAAGAGGCGGAAAACGUUGAGCGUCUGUUCUAUGAAAUCGCCGCCGAACUUAUCGGUCAAGCUCGCAGCAAGGACGGCAACAGUGCUGCU------GCUGCGGCUGCACA
....((((((.....))))))...(((.((((....)))).))).....((.(((((.....)))))..(((.(((((((..(.(((((....)))))))------)))))))))))... ( -43.40)
>DroGri_CAF1 306 117 - 1
AACGUCCGCCAAAGAGGCUGAGAACGUGGAACGAUUGUUCUAUGAGAUUGCCGCCGAGCUGAUUGGUCAGGCGCGCAGCAAGGAUGGGAGCAGUGCUGCU---GCAGCGGCGGCUGCACA
..((((((((.....)))......((((((((....)))))))).(.((((((((..(((....)))..)))).)))))..)))))...((((((((((.---...))))).)))))... ( -50.20)
>DroWil_CAF1 134 120 - 1
AACAUCCGCCAAAGAGGCCGAAAACGUAGAGCGUUUAUUUUAUGAAAUUGCUGCCGAAUUGAUUGGUCAAGCUAGGAGUAAGGAUGGCAGUGCUGCGGCGGCAGCAGCAGCGGCUGCCCA
..((((((((.....)))...(((((.....)))))...........(((((.((...((((....))))....))))))))))))((((((((((.((....)).))))).)))))... ( -42.10)
>DroMoj_CAF1 276 114 - 1
AACAUCCGCCAAAGAGGCGGAAAACGUAGAACGCCUGUUCUAUGAAAUCGCCGCCGAGCUAAUUGGCCAAGCGCGCAGCAAGGACGGCACCAGUGCCGCA------GCUGCAGCUGCACA
....((((((.....))))))...((((((((....)))))))).....((.(((((.....)))))..(((..(((((...(.(((((....)))))).------))))).)))))... ( -49.20)
>DroAna_CAF1 125 117 - 1
GACAUCCGCCAAGGAGGCGGAGAAUGUGGAGCGACUGUUUUACGAGAUCGCCGCCGAACUAAUUGGCCAGGCACGAAGUAAGGACGGAAGCAGUGCUGCA---GCAGCGGCGGCAGCUCA
....((((((.....))))))....(((((((....)))))))(((...(((((((.........((..(((((........(.(....)).)))))...---))..)))))))..))). ( -44.00)
>consensus
AACAUCCGCCAAAGAGGCGGAAAACGUAGAGCGUCUGUUCUAUGAAAUCGCCGCCGAACUGAUUGGUCAAGCACGCAGCAAGGACGGCAGCAGUGCUGCA___GCAGCGGCGGCUGCACA
.....(((((.....(((((....((((((((....))))))))...)))))(((((.....)))))...((.....))..)).)))..(((((((.((.......)).))).))))... (-29.50 = -28.45 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:24 2006