Locus 2543

Sequence ID 2L_DroMel_CAF1
Location 7,029,149 – 7,029,253
Length 104
Max. P 0.816442
window4066

overview

Window 6

Location 7,029,149 – 7,029,253
Length 104
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 79.58
Mean single sequence MFE -20.87
Consensus MFE -15.75
Energy contribution -15.83
Covariance contribution 0.08
Combinations/Pair 1.22
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.67
SVM RNA-class probability 0.816442
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7029149 104 + 22407834
UAAAAUAUACUUUACUUUACAUGCAAAAGUAUCUUUACGUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU------GUGCAAUCGAAAGCUUUUAAGCGGAACGAACA
..(((.(((((((............))))))).))).(((((..((((((((((((((((((((....))).------))).))))))))....)))))).))))).... ( -24.30)
>DroSec_CAF1 15160 98 + 1
UUAAAUACAUUUUACUUUACAUGUUAAAGUAUCUUUACAUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU------GUGAAAUCGAAAGCUUCU--GCAG----AACA
((((((......(((((((.....))))))).......))))))((..((((((((((((((((....))).------))).))))).)))))...--))..----.... ( -20.72)
>DroSim_CAF1 15296 100 + 1
UUAAAUACAUUUUACUUUACAUGUUAAAGUAUCUUUACAUUUAUGCUCAGUUUCGAUUCAUUCCAAUUGGAU------GUGCAAUCGAAAGCUUCUAAGCAG----AACA
.(((((......(((((((.....))))))).......)))))((((.((((((((((((((((....))).------))).))))))))....)).)))).----.... ( -20.12)
>DroEre_CAF1 15462 106 + 1
GUAAAUAAUUUUUACUUUACAUGGUAAAGUAUCUUUAAGUUUUAGUUUGGUUUCGAUUCAUUUCAAUUGGAAGACGAAACACAAUCGAUAGUUUCCAAGCAG----AAUC
............((((((((...)))))))).......(((((.((((((..((((((..((((...........))))...))))))......))))))))----))). ( -18.30)
>DroYak_CAF1 15651 106 + 1
AUAGAUAAAUAUUACUUUACAUGGUAGAGUAUCUUUACGUUUCAGUUUGGUUUCGAUUCAUUUCAAUUGGAAGGCGAUAUGCAAUCGAUAGUUUCCAAGCAG----AACC
.....((((...((((((((...))))))))..)))).((((..((((((..(((((((((.((...........)).))).))))))......)))))).)----))). ( -20.90)
>consensus
UUAAAUAAAUUUUACUUUACAUGGUAAAGUAUCUUUACGUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU______GUGCAAUCGAAAGCUUCUAAGCAG____AACA
............(((((((.....))))))).............((((((((((((((((((((....))).......))).))))))))....)))))).......... (-15.75 = -15.83 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:23 2006