| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,019,303 – 7,019,404 |
| Length | 101 |
| Max. P | 0.959080 |
| Location | 7,019,303 – 7,019,404 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -15.56 |
| Energy contribution | -19.78 |
| Covariance contribution | 4.22 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7019303 101 + 22407834 CCAAACCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACUAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA-GA----GGCGAU-----UAAAAU ................((((((....))))))....((....))((((..(((..(.....)..)))..))))(((.(((((.....-))----))).))-----)..... ( -31.20) >DroVir_CAF1 91468 106 + 1 CCAGCCCCAAAGCCAGCGGAUCUUCGGGUCCAACCACCACCAGCGAGAUUCGUUUCUGCGUGCACCACUUGGCAAUGGCCUGGAAAA-GA----UUCCAAAUCAACACAAU ((((..(((..(((((.(((((....)))))...(((((..((((.....))))..)).)))......)))))..))).))))....-((----(.....)))........ ( -30.40) >DroPse_CAF1 6291 106 + 1 CCAGACCCAAGGCCAAGGGAUCUUCGGGUCCAACGACCACUAGAGAGAUUUCAUUUUUCUUGCUCCAUUUGGCAAUGGCCUGAAGAAAGAACAGAGCAAA-----AAAUAU .(((..(((..(((((((((((....)))))...((.((..((((((((...)))))))))).))..))))))..))).)))..................-----...... ( -27.50) >DroSec_CAF1 5543 100 + 1 CCAAGCCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACCAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA-GA----GGCGAU-----A-AAAU ...........(((..((((((....)))))).......(((..((((..(((..(.....)..)))..))))..))).........-..----)))...-----.-.... ( -32.30) >DroSim_CAF1 5608 101 + 1 CCAAGCCCAAAGCCAGGGGAUCUUCGGGUCCCACAACCACCAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUAGCCUUUAAAA-GA----GGCGAA-----AAAAAU ((((((((........((((((....))))))..........)))))...)))(((...(((((......)))))..(((((.....-))----))))))-----...... ( -32.97) >DroEre_CAF1 5639 98 + 1 CCAGACCCAAAGCCAAGGGAUCUUCGGGUCCCACGAUCACCAGGGAUAUCUGGUUUUCCUUACUCCAUUUGGCAAUGGCCUUUAAAG-AG----GG-AAA------AUAA- ......(((..(((((((((((....))))))..((..((((((....))))))..))..........)))))..)))((((....)-))----).-...------....- ( -34.20) >consensus CCAAACCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACCAGGGAUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA_GA____GGCGAA_____AAAAAU ...........((((.((((((....))))))......((((((....)))))).....(((((......)))))))))................................ (-15.56 = -19.78 + 4.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:18 2006