Locus 2537

Sequence ID 2L_DroMel_CAF1
Location 7,011,610 – 7,011,730
Length 120
Max. P 0.714125
window4057

overview

Window 7

Location 7,011,610 – 7,011,730
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -23.53
Consensus MFE -18.38
Energy contribution -21.22
Covariance contribution 2.84
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 0.38
SVM RNA-class probability 0.714125
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7011610 120 - 22407834
CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGGAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGUGCAUUAUUUAUCAUCAUUUUCGUUUUAUCUGU
...((((((........((((....))))((((((((((.(((((((..((((......))))..))))))).))))))))))...))))))............................ ( -27.00)
>DroSec_CAF1 32539 120 - 1
CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGCGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU
.(((((......(((((....((((....((((((((((.(((((((..(((..........)))))))))).))))))))))))))...))))).......)))))............. ( -27.82)
>DroSim_CAF1 32339 120 - 1
CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGCGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU
.(((((......(((((....((((....((((((((((.(((((((..(((..........)))))))))).))))))))))))))...))))).......)))))............. ( -27.82)
>DroEre_CAF1 32512 120 - 1
UGCUUGUACCCUAUAAUUAAAUUGUUUUAUUCCGGUGGAUGUGUAAAUUACAUCGAUUUAUCUGCCUUAUAUUUCUACAAGAAGCAGUGAAUUAUUUUUUAUCAUGCUCUUUUUAUCUGU
..((((((...(((((.((((....))))....((..((((((((...)))))......)))..)))))))....)))))).(((((((((......)))))..))))............ ( -17.00)
>DroYak_CAF1 32489 120 - 1
CGCUUGUACCCUAUAAUUAAAUUGUUGUAUUCCGGUGGAUGUGUAAAUUGCAUCGAUUUAUUUGCUUUAUUUUCCUACAAGAAGCUGUGAAUUAUUUAUUAUCAUGCUCUUUUCAUCUGU
.((.((((((.((((((......))))))....))))((((((.....))))))(((((((..(((((............))))).))))))).........)).))............. ( -18.00)
>consensus
CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGUGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU
.(((((......(((((...(((((....((((((((((.(((((((..(((..........)))))))))).)))))))))))))))..))))).......)))))............. (-18.38 = -21.22 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006