| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,007,748 – 7,007,858 |
| Length | 110 |
| Max. P | 0.844296 |
| Location | 7,007,748 – 7,007,858 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.04 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -20.28 |
| Energy contribution | -20.08 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7007748 110 - 22407834 GAUUGUCUGCCGGCCGUGUCUGACUCGCCUUUGUUGUCACAUUCAUUCAAUAAAGGCCAAGUCGGCUUCCCUAUACCCG-UACCCAUACCCAUACCCAUACCCGUACCCCC ..........(((..(((.((((((.((((((((((...........))))))))))..)))))).............(-((....))).......)))..)))....... ( -22.20) >DroSec_CAF1 28694 110 - 1 GAUUGUCUGCCGGCCGUGUCUGACUCGCCUUUGUUGUCACAUUCAUUCAAUAAAGGCCAAGUCGGCUUCCCUAUACCCA-UACCCAUACCCAUGCCCACACCCGUACCCUC ....(..(((.((..(((...((((.((((((((((...........))))))))))..))))(((.............-.............)))))).)).)))..).. ( -24.47) >DroSim_CAF1 28456 110 - 1 GAUUGUCUGCCGGCCGUGUCUGACUCGCCUUUGUUGUCUCAUUCAUUCAAUAAAGGCCAAGUCGGCUUCCCUAUACCCA-UACCCAUACCCAUACCCACACCCGUACCCCC ..........(((..(((...((((.((((((((((...........))))))))))..))))((....))........-................)))..)))....... ( -21.90) >DroEre_CAF1 28803 92 - 1 GAUUGUCUGUCGGCCGUGUCUGACUCGCCUUUGUUGUCACAUUCAUUCAAUAAAGGCCAAGUCGACUUCCCUCUACCCA-UACCC------------------GUACCCCC (((.....)))((....(((.((((.((((((((((...........))))))))))..)))))))...))........-.....------------------........ ( -21.30) >DroYak_CAF1 28626 96 - 1 GAUUGUCUGUCGGCCGUGUCUGACUCGCCUUUGUUGUCACAUUCAUUCAAUAAAGGCCAAGUCGGCUUCCCCAUACCCGCUACCC------GU---------CGUACCCCC ....((.((.(((..(((...((((.((((((((((...........))))))))))..))))((.....)).....)))...))------).---------)).)).... ( -23.70) >DroAna_CAF1 26710 93 - 1 GAUUGUCUACCGGCCGUGUCUGACGCGCCUUUGUUGUCACACUCAUUCAAUAAAGGCGAAGUCGGCUUCCUCCAACC-G-----------------CCCCCCGGUGACCCC ....(((.(((((........(((.(((((((((((...........)))))))))))..)))(((...........-)-----------------))..))))))))... ( -31.50) >consensus GAUUGUCUGCCGGCCGUGUCUGACUCGCCUUUGUUGUCACAUUCAUUCAAUAAAGGCCAAGUCGGCUUCCCUAUACCCA_UACCC______AU___CACACCCGUACCCCC ........((((((.((.....))..((((((((((...........))))))))))...))))))............................................. (-20.28 = -20.08 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:08 2006