Locus 2531

Sequence ID 2L_DroMel_CAF1
Location 7,006,009 – 7,006,121
Length 112
Max. P 0.500000
window4047

overview

Window 7

Location 7,006,009 – 7,006,121
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.76
Mean single sequence MFE -22.40
Consensus MFE -13.72
Energy contribution -12.28
Covariance contribution -1.44
Combinations/Pair 1.38
Mean z-score -1.96
Structure conservation index 0.61
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7006009 112 + 22407834
ACAGCGUCAAAUGUGU-----UUUUGUUUUGACUCGCUU-UUCCCGGCGAGUGAGCUCCACUUUUCCACACAAUUCUCACAAUUAAAAACAUAAGAAGAAAACAGAA-AACGCAC-ACAA
...((((....(((.(-----((((.((.((..(((((.-.....)))))(((((....................))))).........)).)).))))).)))...-.))))..-.... ( -21.85)
>DroPse_CAF1 36224 114 + 1
ACAGCGUCAAAUGU-UUUUAUUUU--UUUUUGUUUUCUU-UGGCCAGAGAGCUAGCUCCACUUUUCCAUACAAUUCUCACAAUUAUAUUUAUAAGAAGAAAACGGAAAAACGCAC-ACA-
...((((.(((((.-...)))))(--(((((((((((((-(((..((.(((....)))..))...))...............((((....)))))))))))))))))))))))..-...- ( -20.50)
>DroSec_CAF1 26970 111 + 1
ACAGCGUGAAAUGU-U-----UUUUGUUUUGACUCGCUU-UUCCCGGCGAGUGAGCUCCACUUUUCCACACAAUUCUCACAAUUAAAAACAUAAGAAGAAAACGGAA-AACGCAC-ACAA
.....(((...(((-(-----(((((((((...(((((.-.....)))))(((((....................)))))..................)))))))))-))))..)-)).. ( -23.05)
>DroYak_CAF1 26867 117 + 1
ACAGUGUCAAAUGU-UUCUUUUUUUGUUUUGACUCGCUU-UUCCCGGCUAGUGAGCUCCACUUUUCCACACAAUUCUCACAAUUAAAAACAUAAGAAGAAAACAGAA-AACGCAUGAAAA
.((((((....(((-((((((((.((((((.....(((.-.....)))..(((((....................))))).....)))))).)))))).)))))...-.)))).)).... ( -23.05)
>DroAna_CAF1 25191 110 + 1
ACAGCGUAAAAUGU-U-----UUUUGUUUUGUUUCGCUUUUUCCCAGUGAGAGAGCUCCACUUUUCCAAAUAGUUCUCACAAUUAAAAAUAAAAGAAGAAAACAGAA-AACGCAC-UC--
...((((....(((-(-----((((.((((((((((((.......)))))(((((((..............))))))).........)))))))..))))))))...-.))))..-..-- ( -25.44)
>DroPer_CAF1 42959 116 + 1
ACAGCGUCAAAUGU-UUUUAUUUUUUUUUUUGUUUUCUU-UGGCCAGAGAGCUAGCUCCACUUUUCCAUACAAUUCUCACAAUUAUAUUUAUAAGAAGAAAACGGAAAAACGCAC-ACA-
...((((.(((((.-...)))))..((((((((((((((-(((..((.(((....)))..))...))...............((((....)))))))))))))))))))))))..-...- ( -20.50)
>consensus
ACAGCGUCAAAUGU_U_____UUUUGUUUUGACUCGCUU_UUCCCAGCGAGUGAGCUCCACUUUUCCACACAAUUCUCACAAUUAAAAACAUAAGAAGAAAACAGAA_AACGCAC_ACA_
...((((..............(((((((((.(((((((.......))))))).....................((((................)))).)))))))))..))))....... (-13.72 = -12.28 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006