| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,004,414 – 7,004,517 |
| Length | 103 |
| Max. P | 0.641694 |
| Location | 7,004,414 – 7,004,517 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.26 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -14.25 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7004414 103 - 22407834 ACAAAUUUUUAUGUUGAACCGAAAGAUCAAUGGCUGCAAGAGCAGAAAAAA----AAGAAAUCACAAAGUUCGAAAGAACAUAAAUUUACAUAAAAAUCUGGUUUCU .((.(((((((((((((..(....)........((((....))))......----......)))....((((....))))........)))))))))).))...... ( -22.30) >DroSec_CAF1 25331 102 - 1 ACAAAUUUUUACGUUGAACCGAAAGAUCAAUGGCUGUAAGAGCAGAAAAAAA-----GAAAUCACAAAGUUCGAAAGAACAUCAAUUUACAUAAAAAUCUGGUUUCU .....(((((.((((((..(....).)))))).((((....))))))))).(-----(((((((....((((....))))....((((......)))).)))))))) ( -21.20) >DroSim_CAF1 24754 105 - 1 ACAAAUUUUUAUGUUGAACCGAAAGAUCAAUGGCUGCAAGAGCAGAAAAAAAGAAAAGAAAUCACAAAGUUCGAAAGAACAUAAAUUUACAUAAAAAUCUGGUUU-- .((.(((((((((((((..(....)........((((....))))................)))....((((....))))........)))))))))).))....-- ( -22.30) >DroEre_CAF1 25340 100 - 1 ACAAAUUUUUAUGUUGAAUCAAAAGAUCAAUGGCUGCAAGAGCA-AAA-A-----AAGAAAUCACAAAGCUUGAAAGAACAUAAAUUUACAUAAAAAUCUGGUUUCU .((.(((((((((((((.((....)))))(((.......((((.-...-.-----.............)))).......)))......)))))))))).))...... ( -12.91) >DroYak_CAF1 25139 101 - 1 ACAAAUUUUUAUGUUGAACCAAAAGAUCAAUGGCUGCAAGAGCGGAAA-A-----AAGAAAUCACAAAGUUCGAAAGAACAUAAAUUUACAUAAAAAUCUGGUUUCU .((.(((((((((((((.(((.........)))((((....))))...-.-----......)))....((((....))))........)))))))))).))...... ( -20.80) >DroAna_CAF1 23594 98 - 1 ACAAAUUUUUAUGUUCGGCCAAAAGAUCAAUAGCAGCAAAAGGC---A-A-----AAGAAAUCACGAAGUCUAUAAGAACAUAAAUUUACAUAAAGAGCUGGUUUUU .......(((((((((.(((.....................)))---.-.-----.(((..(....)..)))....)))))))))...................... ( -11.10) >consensus ACAAAUUUUUAUGUUGAACCAAAAGAUCAAUGGCUGCAAGAGCAGAAA_A_____AAGAAAUCACAAAGUUCGAAAGAACAUAAAUUUACAUAAAAAUCUGGUUUCU .((.((((((((((.((................((((....)))).......................((((....)))).....)).)))))))))).))...... (-14.25 = -15.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:04 2006