| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,003,412 – 7,003,506 |
| Length | 94 |
| Max. P | 0.911968 |
| Location | 7,003,412 – 7,003,506 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 86.74 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -12.62 |
| Energy contribution | -12.50 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7003412 94 - 22407834 AAAUGGAAAUGGAAAACUAAAGAGCCGUCUUUAAAAGGCCUCUAAAAAACAAACC---GGCAGCAGCUGCAUUUCCAAUCACC-AAAAUCGAAAACCA ...((((((((.........((((((..........)).))))...........(---(((....))))))))))))......-.............. ( -19.50) >DroSec_CAF1 24426 92 - 1 GAAUGGAAAUGGAAAACUAAAGAGCCGUCUUUAAAAGGCCUCUAA--AACAAACC---GGCAGCAGCUGCAUUUCCAAUCACC-AAAAUCGAAAACCA ((.((((((((.........((((((..........)).))))..--.......(---(((....)))))))))))).))...-.............. ( -21.30) >DroEre_CAF1 24345 92 - 1 AAAUGGAAAUGGAAAACUUAAACGCCGUCUUUAAAAGGCCUCUAA--AACAAACC---GGCAGCAGCUGCAUUUCCAAUCACC-AAAAUCGAAAACCA ...((((((((............(((..........)))......--.......(---(((....))))))))))))......-.............. ( -17.30) >DroYak_CAF1 24137 88 - 1 ----GGAAAUGGAAAACUUAAGCGCCGUCUCUAAAAGGCCUCUAA--AACAAACC---GGCAGCAGCUGCAUUUCCAAUCACC-AAAAUCGAAAACCA ----(((((((.........((.(((..........)))))....--.......(---(((....))))))))))).......-.............. ( -16.70) >DroAna_CAF1 22685 90 - 1 -AAUGAAAAUGGAAAAUUUAAACGCUGGCUAUAAAAGGC-----A--AACAUACCAACAGCAGCAGCUGCAUUUCCUAUCACCUCAAAUCGAAUACCA -..(((....(((((............(((......)))-----.--..........((((....))))..)))))..)))................. ( -12.00) >consensus _AAUGGAAAUGGAAAACUUAAGCGCCGUCUUUAAAAGGCCUCUAA__AACAAACC___GGCAGCAGCUGCAUUUCCAAUCACC_AAAAUCGAAAACCA ....(((((((............(((..........)))...................(((....))).)))))))...................... (-12.62 = -12.50 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:03 2006