Locus 2528

Sequence ID 2L_DroMel_CAF1
Location 7,001,690 – 7,001,783
Length 93
Max. P 0.640887
window4044

overview

Window 4

Location 7,001,690 – 7,001,783
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.29
Mean single sequence MFE -33.13
Consensus MFE -20.16
Energy contribution -19.50
Covariance contribution -0.66
Combinations/Pair 1.30
Mean z-score -1.54
Structure conservation index 0.61
SVM decision value 0.22
SVM RNA-class probability 0.640887
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7001690 93 - 22407834
AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCGACUAAUUGCACAAAAAAUGCGGCUUG----UGGCC--------UGCGGC
.........(((((.....(---------------((..((((((((.....((......))((((((....)))..))).........))))))))----..)))--------.))))) ( -31.60)
>DroPse_CAF1 27746 111 - 1
-ACAAGUUUGUUGUUUGACAGCGGCUGUGGCGGCUGCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAGCUAAUUGCACAGAAAAUGCGGCUGGCUCAAAGCC--------UGCGGC
-........((((((((.(((((((((...))))))))))))...((((..(((((((..((((((..(..((.....))...)...)))))).))))))))))).--------.))))) ( -40.20)
>DroEre_CAF1 22658 93 - 1
AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCAACUAAUUGCACAAAAAAUGCGGCUUA----UGGCC--------UGCGGC
.....((.(((((.....))---------------)))))..(((((.....((((((((((((((.(((((....))).)).....)))))).)).----)))))--------)))))) ( -26.90)
>DroYak_CAF1 22470 93 - 1
AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCAACUAAUUGCACAAAAAAUGCGGCUUA----UGGCC--------UGCGGU
.........(((((.....(---------------(((..(((((((.....((......))((((((....)))..))).........))))))).----.))))--------.))))) ( -24.70)
>DroAna_CAF1 20984 100 - 1
-ACAAGUUUGUGGUUUGGUG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCACAUAGCCAACUAAUUGCACAAAAAAUGUGGCAUG----CCGCAGCCGCAGAAGCAGU
-.....((((((((...(((---------------(((((.(((((((...(((......)))...)).))))).....((((.....))))))).)----)))).))))))))...... ( -35.20)
>DroPer_CAF1 34471 111 - 1
-ACAAGUUUGUUGUUUGACAGCGGCUGUGGCGGCUGCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAGCUAAUUGCACAGAAAAUGCGGCUGGCUCAAAGCC--------UGCGGC
-........((((((((.(((((((((...))))))))))))...((((..(((((((..((((((..(..((.....))...)...)))))).))))))))))).--------.))))) ( -40.20)
>consensus
_ACAAGUUAGCUGUUUGACG_______________GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAACUAAUUGCACAAAAAAUGCGGCUUG____UGGCC________UGCGGC
...................................(((((((((((((...(((......)))...)).)))))....(((.......)))((((.......))))........)))))) (-20.16 = -19.50 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:02 2006