| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,999,423 – 6,999,517 |
| Length | 94 |
| Max. P | 0.676930 |
| Location | 6,999,423 – 6,999,517 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.51 |
| Mean single sequence MFE | -19.09 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.676930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6999423 94 - 22407834 ------CUGGCAAUUAUGCCUUUAAGAAUUCUUUGUCUUUGUCUUUGCCUUGACUGUUCUAAGCGUUGUUAAUGGCGUAAUUGAUUGUCUUUGAUCGAAG ------....((((((((((.((((.(((.(((.......(((........)))......))).))).)))).))))))))))................. ( -22.12) >DroPse_CAF1 23148 86 - 1 ACUGGCCUGCCAAUUAUGUCUUUAGGAAUUCUCUG------UCU------UGGCAAUCCUAAGAGUUUCUAAUUAUAUAAUUGAUUGUCUUUGAUCG--G ...(((....(((((((((..(((((((((((.((------(..------..)))......)))))))))))..)))))))))...)))........--. ( -20.00) >DroSim_CAF1 19459 88 - 1 ------CUGGCAAUUAUGCCUUUAAGAAUUCGUUG------UCUUUGCCUUGACUGUUCUAAGCGUUGUUAAUGGCGUAAUUGAUUGUCUUUGAUCGAAG ------....((((((((((.((((.((..(((((------((........))).......)))))).)))).))))))))))................. ( -18.51) >DroEre_CAF1 20344 87 - 1 ------CUGGCAAUUAUACCUUUAAG-AUUCUUUG------UCUUUGCCUUGAAUGUUCUAAGCGUUGUUAAUGGCGUAAUUGAUUGUCUUUGAUCGAAG ------..(((((((((((....(((-((.....)------)))).(((((((((((.....))))..)))).))))))..))))))))........... ( -16.00) >DroYak_CAF1 20199 88 - 1 ------CUGGCAAUUAUGCCAUUAGGAAUUCUUAU------UCUUUGCCUUGACUGUUCUAAGCGUUGUUAAUGGCGUAAUUGAUUGUCUUUGAUCGAAG ------....(((((((((((((((.(((.((((.------..................)))).))).)))))))))))))))................. ( -22.11) >DroPer_CAF1 29799 86 - 1 ACUGGCCUGCCAAUUAUGUCUUUAAGAAUUCUCUG------UCU------UGGCGAUUCUAAGAGUUUCUAACUAUAUAAUUGAUUGUCUUUGAUCG--G ...(((....(((((((((..(((..((((((..(------((.------....)))....))))))..)))..)))))))))...)))........--. ( -15.80) >consensus ______CUGGCAAUUAUGCCUUUAAGAAUUCUUUG______UCUUUGCCUUGACUGUUCUAAGCGUUGUUAAUGGCGUAAUUGAUUGUCUUUGAUCGAAG ..........((((((((((.((((.(((.(((........((........)).......))).))).)))).))))))))))................. (-13.59 = -13.59 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:00 2006