Locus 2524

Sequence ID 2L_DroMel_CAF1
Location 6,976,339 – 6,976,439
Length 100
Max. P 0.754205
window4039

overview

Window 9

Location 6,976,339 – 6,976,439
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.82
Mean single sequence MFE -26.75
Consensus MFE -15.45
Energy contribution -16.53
Covariance contribution 1.08
Combinations/Pair 1.13
Mean z-score -2.01
Structure conservation index 0.58
SVM decision value 0.48
SVM RNA-class probability 0.754205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6976339 100 - 22407834
AUCACCUACAUUGCAUCCGAUGCAGCUGGAAAUACUGCAUCGUGCAGCUUCAAGGUUUCUCUGCUGAGUAAGUAUUCCACAAGGAAAAU-----UUCGAAGCUCC
...........((((..((((((((.........))))))))))))(((((.((((((..((...((((....))))....))..))))-----)).)))))... ( -28.70)
>DroPse_CAF1 2806 94 - 1
AUCACCUACAUUGCCUCCGAUGCGGCUGGCAAUACGGCUUCCUGCAGCUUUAAGGUUUCGCUGUUGAGUAAGUA--UCCACCACAAAAUAUCC---------UGC
...((.(((((((((.(((...)))..))))))(((((..(((.........)))....)))))...))).)).--.................---------... ( -19.20)
>DroSec_CAF1 4236 97 - 1
AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA--CCACAAGGAAAAU-----U-AGAAGCUCC
...........((((...(((((((.((....))))))))).))))(((((((..(((((.((((.....))))--.....)))))..)-----)-.)))))... ( -28.20)
>DroSim_CAF1 3899 97 - 1
AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA--CCACAAGGGAAAU-----U-AGGAGCUCC
...........((((...(((((((.((....))))))))).))))(((((..(((((((((.....((....)--)....))))))))-----)-.)))))... ( -31.10)
>DroEre_CAF1 4211 94 - 1
AUCACCUACAUUGCAUCCGACGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUCUCCCUGCUAAGUAAGUA--CCAAAAGGAAACUGGGCUG---------C
..................((.((((.((....)))))).))..(((((((...(((((..((....))..)).)--))...((....))))))))---------) ( -27.10)
>DroYak_CAF1 4109 102 - 1
AUCACCUACAUUGCAUCCGAUGCAGCCGGAAACACGGCAUCCUGCAGCUUUAAGGUUUCUCUGCUGAGUAAGUA--CCAAAAGGAAUCUGGAAUG-AUGCAUUUC
...........((((((.......((((......)))).(((.....((((..(((..(((....))).....)--))..)))).....)))..)-))))).... ( -26.20)
>consensus
AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA__CCAAAAGGAAAAU_____U_AG_AGCUCC
....(((....((((...(((((((.((....))))))))).))))((((..(((....)))...))))............)))..................... (-15.45 = -16.53 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:57 2006