Locus 2523

Sequence ID 2L_DroMel_CAF1
Location 6,975,466 – 6,975,576
Length 110
Max. P 0.979485
window4038

overview

Window 8

Location 6,975,466 – 6,975,576
Length 110
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 73.82
Mean single sequence MFE -28.32
Consensus MFE -22.55
Energy contribution -22.42
Covariance contribution -0.14
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.80
SVM decision value 1.84
SVM RNA-class probability 0.979485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6975466 110 - 22407834
CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACCCUGGAGAUAGCCUUCCCGGCUGCGAAGUAUGUCUAGCACACCUAUGUUGGUUAACCCCACGCAUAAC--CACAUC
...(((..(((((((....((.(((...((((((.(....).(.(((((.....))))))...))))))...)).).))..)))))))....))).........--...... ( -31.20)
>DroVir_CAF1 1885 94 - 1
CCAGGGACGCCAACAAACUGGCGGUGACACAUACACGCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC---UCAUUCGUUCAA------UAU---------AA
....((((((((......))))((((..((((((.(....).(((((((.....)))))))..))))))....))))---......))))..------...---------.. ( -26.10)
>DroGri_CAF1 2155 94 - 1
CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACUCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC---UCAUGCGUUCAU------UAU---------AG
...(((((((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...)).))---))..........------...---------.. ( -27.60)
>DroWil_CAF1 1772 108 - 1
UCAGGGACGCCAACAAACUGGCGGUGAUACAUACACUCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAACAAAACCAGCACUUCUUACAAUUCGUUCAAU--CU--AA
...((..(((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...))....))........................--..--.. ( -24.50)
>DroMoj_CAF1 2060 90 - 1
CCAGGGACGCCAACAAGCUGGCGGCGACACAUACACGCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUCC--ACAUUCGUU-----------U---------AA
....((((((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...)).)))--.........-----------.---------.. ( -26.90)
>DroAna_CAF1 1793 112 - 1
CCAGGGACGCCAACAAACUGGCGGCGAUACGUAUACCCUGGAGAUAGCCUUCCCGGCUGUAAAGUAUGUCUAGCACUUGUUCGUUCGUUCAGCCUACGAGUAACACAAAAUC
((((((.(((((......)))))(((...)))...))))))..((((((.....))))))..............((((((..(((.....)))..))))))........... ( -33.60)
>consensus
CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACCCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC___ACAUUCGUUCAC______UAU_________AA
.......(((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...))...................................... (-22.55 = -22.42 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006