Locus 2520

Sequence ID 2L_DroMel_CAF1
Location 6,969,551 – 6,969,646
Length 95
Max. P 0.752995
window4032

overview

Window 2

Location 6,969,551 – 6,969,646
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.19
Mean single sequence MFE -18.72
Consensus MFE -12.42
Energy contribution -12.92
Covariance contribution 0.50
Combinations/Pair 1.05
Mean z-score -1.88
Structure conservation index 0.66
SVM decision value 0.48
SVM RNA-class probability 0.752995
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6969551 95 - 22407834
CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UUUUUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU
.....(((..(((.-((((.(((((.(((-(-(......((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -20.50)
>DroPse_CAF1 9401 88 - 1
CACUAACCCGUGCC-UUUUAUUUUCUCUUAUCUU-UUUGCAGUUUUCAAU--AUUGAAAAUCUGA-------AC---------------------AAUGUGAAAACAAAAGCAUAAGUAU
.....((..((((.-((((.(((((.(.......-....(((((((((..--..)))))).))).-------..---------------------...).))))).))))))))..)).. ( -13.13)
>DroEre_CAF1 10007 94 - 1
CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UU-UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU
.....(((..(((.-((((.(((((.(((-(-(.-....((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -21.10)
>DroYak_CAF1 10130 94 - 1
CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UU-UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU
.....(((..(((.-((((.(((((.(((-(-(.-....((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -21.10)
>DroMoj_CAF1 10687 113 - 1
CGCUAACUCGUGCCAUUUUGUUUUCUUUA-U-UU-UUUGCAGUUUUCAAU--AUUGAAAAUCUGAAA-AUCAGUAUAUUGAAUAUAUACGUCCAGAGUGUGAAAACAA-AUCAUAAGUAU
.....(((..((....(((((((((..((-(-((-(...(((((((((..--..)))))).)))...-....((((((.....))))))....)))))).))))))))-).))..))).. ( -23.00)
>DroAna_CAF1 7274 96 - 1
CACUAACCCGUGCC-UUUUCUUUUCUCUA-U-CUUUUUGCAGUUUUCAAUCAAUUGAAAAUCUGACUAAUGACU---------------------AGUGUGAUAUCAAAUGCAUAAGUAU
.....((..((((.-(((.....((.(((-(-(......((((((((((....))))))).)))......)).)---------------------))...))....))).))))..)).. ( -13.50)
>consensus
CACUAACUCGUGCC_UUUUAUUUUCUCUG_U_UU_UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU_CUGACU_____________________AGUGUGAAAGCAAAAGCAUAAGUAU
.....(((.((((..........................((((((((((....))))))).))).................................(((....)))...)))).))).. (-12.42 = -12.92 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:50 2006