Locus 2519

Sequence ID 2L_DroMel_CAF1
Location 6,963,734 – 6,963,829
Length 95
Max. P 0.590321
window4031

overview

Window 1

Location 6,963,734 – 6,963,829
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 89.12
Mean single sequence MFE -23.48
Consensus MFE -21.08
Energy contribution -20.81
Covariance contribution -0.27
Combinations/Pair 1.25
Mean z-score -1.30
Structure conservation index 0.90
SVM decision value 0.11
SVM RNA-class probability 0.590321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6963734 95 - 22407834
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA
(((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79)
>DroVir_CAF1 5708 95 - 1
GACACAGUCAAUAUGUCUGGCCUGGAAAAAUUUCAAGACACUCCGGCUUGGCGUCAGAAAUUGCUUAAGCAUUUGCUUCUGGAUCGGUAAAUAGA
.((.(.(((...(((((.((((.(((...............))))))).)))))(((((..(((....))).....)))))))).)))....... ( -20.36)
>DroSec_CAF1 4562 95 - 1
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA
(((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79)
>DroSim_CAF1 3758 95 - 1
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA
(((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79)
>DroEre_CAF1 4539 95 - 1
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGCCAGUUCCUAAUGACCGAGCGGUAAAUACA
...........((((((...(((((................)))))...)))))).......(((((.(((......))).).))))........ ( -21.39)
>DroYak_CAF1 4541 95 - 1
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA
(((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79)
>consensus
CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA
.((.(.(((..((((((...(((((................)))))...))))))(((((((.....))))))).......))).)))....... (-21.08 = -20.81 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:49 2006