Locus 2518

Sequence ID 2L_DroMel_CAF1
Location 6,962,681 – 6,962,794
Length 113
Max. P 0.579462
window4030

overview

Window 0

Location 6,962,681 – 6,962,794
Length 113
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -26.37
Consensus MFE -6.47
Energy contribution -7.23
Covariance contribution 0.76
Combinations/Pair 1.48
Mean z-score -2.56
Structure conservation index 0.25
SVM decision value 0.09
SVM RNA-class probability 0.579462
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6962681 113 + 22407834
UCCUCUAUAUCG------UCCUCUUCCUCCUCGACCUCAUCCUUCGGAAGUGAGGCCAGCUCUCUAAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC
...........(------((((((((........((((((.(....)..)))))).(((.((.....)))))....)))))........((((....)))).........))))..... ( -25.80)
>DroSec_CAF1 3509 113 + 1
UCCUCUAUAUCG------UCCUCUUCCUCCUCGACUUCAUCCUUCGGAUGCGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC
...........(------((((((((....(((....(((((...))))))))((((..((.....))..))))..)))))........((((....)))).........))))..... ( -27.10)
>DroEre_CAF1 3524 113 + 1
UCUUCUAUCUCG------UCCUCUUCCUCCUCCACUUCCUCCUGCGGAAGUGAGGCAAGCUCUUUUAGACUGACAUGAAGAUCGCUUAAAAGCUCCAACUCCUCUCCCUUAGACAUUCC
...........(------((.(((((..((((.((((((......))))))))))..((.((.....)))).....)))))..(((....)))..................)))..... ( -21.90)
>DroYak_CAF1 3504 113 + 1
UCCUCUACAUCG------UCCUCUUCCUCCUCCACUUCCUCCUGCGGAAGUGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAAAGCUCCAGCUCCUCCCCCUUGGACAUUCC
...........(------((((((((......(((((((......))))))).((((..((.....))..))))..)))))..(((....))).................))))..... ( -29.40)
>DroAna_CAF1 1125 119 + 1
UUUUCUACAUAAUCGGAUUCCUGUUCCUCCUCUACUGGCUCAUUCUGCUCCUUCGUUAGCUCUUUUAGGCUACCGUGGAGAUCGCUUAGGAGCUCCAGUUCUUCGCCCUUUGACAUUCC
..............(((((((((......((((((.(((.......))).....(.(((((......))))).)))))))......)))))).)))....................... ( -24.70)
>DroPer_CAF1 3455 107 + 1
UUCUCAACAUCA------UCCGAUUCAUCAUC------AUUUUUGGAGGGAGACGCCAGCUCUAUUAAGCUGCCAUGCAAAUCACCCAGCAGCUCGCGCUCUUCUUCCUUGGACAUGUU
.....(((((..------((((((.....)))------......((((((((((((.((((.......((((...((.....))..)))))))).))).)))))))))..))).))))) ( -29.31)
>consensus
UCCUCUACAUCG______UCCUCUUCCUCCUCCACUUCAUCCUUCGGAAGUGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC
.......................................(((...(((...((((..(((((((((((.................)))))))....)))))))))))...)))...... ( -6.47 =  -7.23 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:48 2006