| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,938,192 – 6,938,312 |
| Length | 120 |
| Max. P | 0.788921 |
| Location | 6,938,192 – 6,938,312 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.44 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -15.42 |
| Energy contribution | -16.12 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6938192 120 - 22407834 AAACCCUGGAGCAGGAACGCCAAAGUUCCUUCAAUGCUGAGCUUUCCAAUAAGAUCAAGAAACUGGAGGAGGAGCUGCGUUUCUCCAAUGAGCUAACCCGAAAGUUGCAGGUUAAUCAGC ....((((.(((((((((......)))))).........(((((((((...............))))((((((((...))))))))...))))).........))).))))......... ( -33.86) >DroVir_CAF1 6992 119 - 1 AGACACUCGAACUGGAAAGGCAAAGCUCCUACAAUACCGAGCUCUGCGCCAAGGUCAAGAAGCUGGAGGAGGAGCUACGCUUCUCCAGUGAACUGGCGCGCAAGCUGCAGGUAAGUUCG- ..........((((((.((((..(((((((.(....((.((((((..((....))..)).))))))..))))))))..)))).))))))(((((.((((....)).)).....))))).- ( -45.50) >DroPse_CAF1 5329 116 - 1 AAACCCUCGAACAGGAGCGACAAAGUUCCUUCAACGCCGAGCUAUCCACCAAGGUGAAGAAGCUGGAAGAGGAGCUGCGAUUCUCAAACGAACUUACAAGAAAGUUGCAGGUAAUU---- ....((((((..((((((......))))))))....((.((((.(((((....)))..))))))))..))))(.((((((((.((..............)).)))))))).)....---- ( -32.84) >DroWil_CAF1 6340 117 - 1 AAACGCUCGAGCAGGAGAGACAAAGUUCCUACAACGCGGAACUUGCUGCCAAGGUCAAAAAACUGGAGGAAGAAUUACGAUUUUCCAGUGAGCUUACCAGAAAAUUGCAGGCAAGUA--- ....(((...(((((..((...(((((((........))))))).)).))..(((......(((((((((..........)))))))))......))).......))).))).....--- ( -30.30) >DroMoj_CAF1 6244 119 - 1 AGACGCUUGAGCUGGAGAGACAGAGCUCCUACAACGCCGAGCUGAGCGCCAAGGUCAAGAAGCUGGAAGAGGAGCUGCGUUUCUCCAACGAGCUAACGCGCAAGCUACAGGUGCGUAUG- .(.((((((((((((((((((..(((((((......((.((((....((....)).....))))))...)))))))..))))))))...(.((....)).).)))).))))))).....- ( -48.70) >DroPer_CAF1 5225 116 - 1 AAACCCUGGAACAGGAGCGUCAAAGCUCCUUCAACGCCGAGCUAUCCACCAAGGUGAAGAAGCUGGAAGAGGAGCUGCGAUUCUCAAACGAACUUACAAGAAAGUUGCAGGUAAUU---- ....((((.(((..(((.(((..((((((((.....((.((((.(((((....)))..))))))))..))))))))..))).))).......((....))...))).)))).....---- ( -36.70) >consensus AAACCCUCGAACAGGAGAGACAAAGCUCCUACAACGCCGAGCUAUCCACCAAGGUCAAGAAGCUGGAAGAGGAGCUGCGAUUCUCCAACGAACUUACAAGAAAGUUGCAGGUAAGU____ ..........((.((((.(((..(((((((.(....((.((((....((....)).....))))))..))))))))..))).))))....((((........))))....))........ (-15.42 = -16.12 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:38 2006