Locus 2511

Sequence ID 2L_DroMel_CAF1
Location 6,928,047 – 6,928,148
Length 101
Max. P 0.508112
window4018

overview

Window 8

Location 6,928,047 – 6,928,148
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.63
Mean single sequence MFE -25.34
Consensus MFE -20.18
Energy contribution -20.62
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.508112
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6928047 101 + 22407834
AUCAGUUGACCAGCUGAUCGAAAGGCAAAGGAGUUUGAAGU--ACAUGUAUGAAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCU
............(((((((((((...((((..(.(..((((--.((.((((........))))...))))))..).)..))))...)))))))))))...... ( -29.30)
>DroSec_CAF1 12113 101 + 1
AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUGAAGU--ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC
............(((((((((.....((((..(.(..((((--.((.((((........))))...))))))..).)..)))).....)))))))))...... ( -26.60)
>DroSim_CAF1 12514 101 + 1
AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUUAAGU--ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC
...((((((((.(((((....)))))...((((((..((((--(......(....)....)))))..))))))))))))))...................... ( -24.90)
>DroEre_CAF1 13655 101 + 1
AUCAGCUGACCAACUGAUCGAUCGGCUAAGGAGUUUGAAGU--ACAUGUAUGGAGAAAAAUGCUUUUGACUUUGGUCAAUUUUAUGUUUCUAUCGGCAUUUUA
....(((((....((((....))))...(((((..((((((--....((((........))))...((((....))))))))))..))))).)))))...... ( -19.40)
>DroYak_CAF1 12201 103 + 1
AUCAGUUGACCAGCUGAUCGAUCGGCUAAGGAGUUUGAAGUAUACAUGUAUGGAAAGAAAUGCUUUUGACAUUGGUCAACUUUAUGUUUCGAUCGGCAUUUCC
............(((((((((..((((((...(((.(((((((...(........)...))))))).))).))))))(((.....))))))))))))...... ( -26.50)
>consensus
AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUGAAGU__ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC
............(((((((((......(((..(.(..((((......((((........)))).....))))..).)..)))......)))))))))...... (-20.18 = -20.62 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:37 2006